C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: branched chain aminotransferase 1, cytosolic
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030268 Bcat1 10090 - 6:144993835-145076184 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032402 Bcat1-001 144993835-145048812 protein_coding
  ENSMUST00000048252 Bcat1-003 145004118-145076184 protein_coding
  ENSMUST00000111742 Bcat1-002 144999158-145076184 protein_coding
  ENSMUST00000123930 Bcat1-004 145019192-145047853 protein_coding
  ENSMUST00000136819 Bcat1-008 145015676-145032843 protein_coding
  ENSMUST00000145911 Bcat1-007 145004398-145035197 processed_transcript
  ENSMUST00000149769 Bcat1-009 145032809-145047661 protein_coding
  ENSMUST00000154611 Bcat1-005 145032873-145040867 protein_coding
  ENSMUST00000155693 Bcat1-006 145032790-145040755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032402ENSMUST00000048252ENSMUST00000111742ENSMUST00000123930ENSMUST00000136819ENSMUST00000145911ENSMUST00000155693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032402 0.975±0.66 0.026±0.00 0.052±0.00 1.665±0.95 0.069±0.03 0.017±0.00 0.027±0.00 0.491±0.07 0.007±0.00 N/A 0.021±0.01 2.386±0.34 0.465±0.06 0.025±0.00
ENSMUST00000048252 N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000111742 6.933±6.78 0.351±0.15 0.683±0.21 8.391±3.32 0.633±0.07 0.086±0.02 0.146±0.05 4.560±0.43 0.101±0.05 0.079±0.01 0.046±0.02 36.811±35.43 20.477±17.49 0.093±0.05
ENSMUST00000123930 N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00 N/A 0.106±0.01 N/A N/A N/A
ENSMUST00000136819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.214±0.00
ENSMUST00000145911 N/A N/A N/A 25.609±0.00 N/A N/A N/A N/A N/A N/A 0.036±0.00 85.980±0.00 28.578±15.11 0.127±0.06
ENSMUST00000155693 N/A N/A N/A N/A N/A 0.344±0.24 N/A N/A N/A 0.077±0.02 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XB CIL_0004XB_0002 CGP 6:143828425-145076184
CIL_0008XB CIL_0008XB_0002 VISTA 6:144644642-145246014

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004084 IDA branched-chain-amino-acid transaminase activity
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 IDA cytosol
GO:0009082 IEA branched-chain amino acid biosynthetic process
GO:0009083 IDA branched-chain amino acid catabolic process
GO:0031571 ISA mitotic G1 DNA damage checkpoint
GO:0034644 ISA cellular response to UV
GO:0042802 IEA identical protein binding
GO:0052654 IEA L-leucine transaminase activity
GO:0052655 IEA L-valine transaminase activity
GO:0052656 IEA L-isoleucine transaminase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045568 bcat1 branched chain aminotransferase 1, cytosolic protein_coding Danio_rerio
ENSG00000060982 BCAT1 branched chain amino-acid transaminase 1, cytosolic protein_coding Homo_sapiens

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