C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: copine family member IX
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030270 Cpne9 10090 + 6:113282307-113305627 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041203 Cpne9-001 113282307-113305569 protein_coding
  ENSMUST00000124574 Cpne9-006 113282335-113283429 retained_intron
  ENSMUST00000128148 Cpne9-007 113282339-113283507 processed_transcript
  ENSMUST00000130191 Cpne9-003 113282310-113304824 nonsense_mediated_decay
  ENSMUST00000132372 Cpne9-002 113282307-113305627 retained_intron
  ENSMUST00000134523 Cpne9-004 113288504-113305571 retained_intron
  ENSMUST00000136728 Cpne9-009 113294325-113301679 processed_transcript
  ENSMUST00000138388 Cpne9-008 113282365-113284424 processed_transcript
  ENSMUST00000155779 Cpne9-005 113282364-113283969 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041203ENSMUST00000124574ENSMUST00000128148ENSMUST00000130191ENSMUST00000132372ENSMUST00000134523ENSMUST00000136728ENSMUST00000138388ENSMUST00000155779
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041203 0.010±0.00 0.417±0.19 N/A N/A N/A 0.013±0.01 N/A 0.013±0.00 0.021±0.00 0.020±0.00 0.603±0.00 N/A N/A
ENSMUST00000124574 N/A N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A 0.361±0.00 N/A
ENSMUST00000128148 N/A 2.073±0.87 N/A N/A N/A N/A 0.154±0.00 0.108±0.03 N/A N/A N/A N/A N/A
ENSMUST00000130191 0.020±0.00 0.666±0.24 0.010±0.00 6.093±7.86 0.090±0.00 0.011±0.00 0.077±0.03 0.018±0.01 N/A N/A 0.190±0.13 0.062±0.06 0.043±0.00
ENSMUST00000132372 0.024±0.00 N/A N/A N/A 0.020±0.00 N/A 0.019±0.00 0.007±0.00 N/A N/A N/A 0.026±0.00 0.093±0.03
ENSMUST00000134523 0.021±0.00 0.277±0.14 0.012±0.00 0.680±0.57 0.023±0.01 0.018±0.00 0.011±0.00 0.004±0.00 0.019±0.01 0.011±0.00 0.058±0.05 0.033±0.01 0.133±0.02
ENSMUST00000136728 0.069±0.00 N/A 0.047±0.00 N/A 0.194±0.00 N/A 0.264±0.21 0.026±0.00 N/A N/A 1.225±0.38 0.234±0.16 N/A
ENSMUST00000138388 N/A N/A N/A N/A 0.265±0.00 N/A 0.179±0.07 0.033±0.00 N/A N/A N/A N/A N/A
ENSMUST00000155779 N/A N/A N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WG CIL_0002WG_0002 CGP 6:113237843-113305627
CIL_00035Z CIL_00035Z_0002 CGP 6:113282307-113324857

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005615 IEA extracellular space
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000144550 CPNE9 copine family member IX protein_coding Homo_sapiens

Loading