C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002WG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163719-ENSG00000144550 CGP 9606 3:9649433-9729908
GeneTranscriptPositionBiotype
ENSG00000144550 (CPNE9)
copine family member IX 		ENST00000273027 (CPNE9-004) 9715340-9726713 protein_coding
ENST00000383831 (CPNE9-002) 9703826-9727450 protein_coding
ENST00000383832 (CPNE9-001) 9703807-9729908 protein_coding
ENST00000491802 (CPNE9-003) 9703833-9705033 retained_intron
ENST00000613455 (CPNE9-201) 9703826-9727441 protein_coding
ENSG00000163719 (MTMR14)
myotubularin related protein 14 		ENST00000296003 (MTMR14-001) 9649462-9702392 protein_coding
ENST00000351233 (MTMR14-005) 9649512-9702389 protein_coding
ENST00000353332 (MTMR14-002) 9649433-9702393 protein_coding
ENST00000414996 (MTMR14-006) 9668743-9702387 nonsense_mediated_decay
ENST00000416864 (MTMR14-010) 9649515-9683217 nonsense_mediated_decay
ENST00000420925 (MTMR14-009) 9649450-9702387 protein_coding
ENST00000430020 (MTMR14-003) 9649505-9683728 nonsense_mediated_decay
ENST00000431250 (MTMR14-012) 9675514-9685229 protein_coding
ENST00000437997 (MTMR14-007) 9649519-9668752 nonsense_mediated_decay
ENST00000447144 (MTMR14-004) 9649473-9702216 nonsense_mediated_decay
ENST00000449543 (MTMR14-011) 9659626-9678058 nonsense_mediated_decay
ENST00000480578 (MTMR14-008) 9649609-9653873 retained_intron
ENST00000606184 (MTMR14-013) 9699427-9702392 retained_intron
ENST00000617504 (MTMR14-201) 9649433-9702394 protein_coding
CIL_0002WG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030269-ENSMUSG00000030270 CGP 10090 6:113237843-113305627
GeneTranscriptPositionBiotype
ENSMUSG00000030269 (Mtmr14)
myotubularin related protein 14 		ENSMUST00000113146 (Mtmr14-001) 113237843-113281202 protein_coding
ENSMUST00000129883 (Mtmr14-003) 113237897-113281387 nonsense_mediated_decay
ENSMUST00000134945 (Mtmr14-004) 113266005-113281196 protein_coding
ENSMUST00000137772 (Mtmr14-007) 113260625-113277935 protein_coding
ENSMUST00000142938 (Mtmr14-002) 113237851-113270794 nonsense_mediated_decay
ENSMUST00000144976 (Mtmr14-006) 113254099-113269509 nonsense_mediated_decay
ENSMUST00000148523 (Mtmr14-008) 113265974-113280919 nonsense_mediated_decay
ENSMUST00000151149 (Mtmr14-009) 113269549-113281087 protein_coding
ENSMUST00000156141 (Mtmr14-005) 113239471-113255938 protein_coding
ENSMUSG00000030270 (Cpne9)
copine family member IX 		ENSMUST00000041203 (Cpne9-001) 113282307-113305569 protein_coding
ENSMUST00000124574 (Cpne9-006) 113282335-113283429 retained_intron
ENSMUST00000128148 (Cpne9-007) 113282339-113283507 processed_transcript
ENSMUST00000130191 (Cpne9-003) 113282310-113304824 nonsense_mediated_decay
ENSMUST00000132372 (Cpne9-002) 113282307-113305627 retained_intron
ENSMUST00000134523 (Cpne9-004) 113288504-113305571 retained_intron
ENSMUST00000136728 (Cpne9-009) 113294325-113301679 processed_transcript
ENSMUST00000138388 (Cpne9-008) 113282365-113284424 processed_transcript
ENSMUST00000155779 (Cpne9-005) 113282364-113283969 processed_transcript
ENSMUSG00000090194 (Gm16161)
predicted gene 16161 		ENSMUST00000162239 (Gm16161-001) 113275837-113276930 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WG_0001ENSG00000144550ENST00000273027ENST00000383831ENST00000383832ENST00000491802ENST00000613455ENSG00000163719ENST00000296003ENST00000351233ENST00000353332ENST00000414996ENST00000416864ENST00000420925ENST00000430020ENST00000431250ENST00000437997ENST00000447144ENST00000449543ENST00000480578ENST00000606184ENST00000617504CIL_0002WG_0002ENSMUSG00000030269ENSMUST00000113146ENSMUST00000129883ENSMUST00000134945ENSMUST00000137772ENSMUST00000142938ENSMUST00000144976ENSMUST00000148523ENSMUST00000151149ENSMUST00000156141ENSMUSG00000030270ENSMUST00000041203ENSMUST00000124574ENSMUST00000128148ENSMUST00000130191ENSMUST00000132372ENSMUST00000134523ENSMUST00000136728ENSMUST00000138388ENSMUST00000155779ENSMUSG00000090194ENSMUST00000162239
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WG_0001ENSG00000144550ENST00000273027ENST00000383832ENST00000491802ENST00000613455ENSG00000163719ENST00000296003ENST00000351233ENST00000353332ENST00000414996ENST00000416864ENST00000420925ENST00000449543ENST00000606184CIL_0002WG_0002ENSMUSG00000030269ENSMUST00000113146ENSMUST00000129883ENSMUST00000134945ENSMUST00000137772ENSMUST00000142938ENSMUST00000144976ENSMUST00000151149ENSMUST00000156141ENSMUSG00000030270ENSMUST00000041203ENSMUST00000124574ENSMUST00000128148ENSMUST00000130191ENSMUST00000132372ENSMUST00000134523ENSMUST00000136728ENSMUST00000138388ENSMUST00000155779ENSMUSG00000090194ENSMUST00000162239
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144550 ENST00000273027 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.251±0.01 0.099±0.02 0.790±0.00
ENST00000383831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000383832 0.068±0.00 0.247±0.00 N/A 5.343±2.58 0.048±0.00 0.168±0.00 N/A N/A 0.029±0.00 0.023±0.01 N/A 0.058±0.04 0.027±0.00 0.216±0.07
ENST00000491802 N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000613455 N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 0.072±0.00
ENSG00000163719 ENST00000296003 6.099±0.00 7.516±0.00 2.076±0.00 3.538±0.00 4.630±0.00 2.709±0.00 7.530±3.75 4.232±1.05 2.922±0.00 3.192±0.00 16.156±0.00 6.034±2.35 11.656±2.45 4.854±0.00
ENST00000351233 6.197±0.00 7.353±0.00 1.935±0.00 3.374±0.85 3.933±0.00 4.769±0.00 9.248±0.00 N/A 1.345±0.00 N/A N/A 3.443±2.09 12.133±6.73 10.662±6.89
ENST00000353332 3.227±0.00 5.196±0.00 N/A 1.606±0.00 2.151±0.32 N/A 1.319±0.00 8.058±0.00 3.399±0.00 2.250±0.42 5.729±3.78 1.888±0.64 4.749±0.70 5.780±0.00
ENST00000414996 N/A N/A N/A N/A 2.159±0.00 1.178±0.00 N/A N/A N/A N/A N/A 3.350±0.00 N/A 3.632±0.00
ENST00000416864 N/A N/A N/A 1.907±0.00 3.288±0.00 N/A N/A N/A 1.562±0.00 N/A N/A 3.826±0.00 N/A N/A
ENST00000420925 N/A N/A N/A N/A N/A 1.802±0.00 N/A N/A 2.966±0.00 2.381±0.00 N/A N/A N/A N/A
ENST00000430020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449543 N/A N/A 2.776±0.00 N/A N/A N/A N/A 5.533±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606184 N/A 2.912±0.00 N/A N/A 1.043±0.00 0.697±0.00 N/A N/A 0.507±0.00 1.134±0.12 N/A 1.882±0.07 N/A 4.366±0.00
ENST00000617504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030269 ENSMUST00000113146 9.475±0.41 9.563±4.13 7.628±0.91 10.514±1.37 8.041±2.09 11.701±1.15 4.375±1.14 10.195±0.38 7.624±0.70 10.203±0.70 7.911±1.24 12.318±4.56 8.666±3.63 7.455±3.58
ENSMUST00000129883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.616±1.04 3.768±1.16 N/A
ENSMUST00000134945 5.229±1.59 5.386±0.47 4.089±0.00 4.130±1.05 6.602±1.30 5.482±1.05 2.129±0.00 6.032±1.27 3.832±0.78 5.476±0.94 N/A 7.934±1.21 5.506±1.05 3.662±0.21
ENSMUST00000137772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.951±0.00 N/A N/A
ENSMUST00000142938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.941±0.00 N/A N/A
ENSMUST00000144976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.146±0.00 13.287±2.11 2.531±0.00
ENSMUST00000148523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151149 4.904±0.00 4.111±0.29 N/A N/A 6.222±1.84 8.503±2.02 2.788±0.00 6.531±0.08 N/A 4.700±0.00 N/A 11.105±2.63 N/A N/A
ENSMUST00000156141 N/A N/A N/A 6.792±0.00 N/A N/A N/A N/A N/A N/A N/A 22.229±0.00 11.598±1.68 13.337±0.00
ENSMUSG00000030270 ENSMUST00000041203 0.010±0.00 0.417±0.19 N/A N/A N/A N/A 0.013±0.01 N/A 0.013±0.00 0.021±0.00 0.020±0.00 0.603±0.00 N/A N/A
ENSMUST00000124574 N/A N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A 0.361±0.00 N/A
ENSMUST00000128148 N/A 2.073±0.87 N/A N/A N/A N/A N/A 0.154±0.00 0.108±0.03 N/A N/A N/A N/A N/A
ENSMUST00000130191 0.020±0.00 0.666±0.24 0.010±0.00 6.093±7.86 0.090±0.00 N/A 0.011±0.00 0.077±0.03 0.018±0.01 N/A N/A 0.190±0.13 0.062±0.06 0.043±0.00
ENSMUST00000132372 0.024±0.00 N/A N/A N/A 0.020±0.00 N/A N/A 0.019±0.00 0.007±0.00 N/A N/A N/A 0.026±0.00 0.093±0.03
ENSMUST00000134523 0.021±0.00 0.277±0.14 0.012±0.00 0.680±0.57 0.023±0.01 N/A 0.018±0.00 0.011±0.00 0.004±0.00 0.019±0.01 0.011±0.00 0.058±0.05 0.033±0.01 0.133±0.02
ENSMUST00000136728 0.069±0.00 N/A 0.047±0.00 N/A 0.194±0.00 N/A N/A 0.264±0.21 0.026±0.00 N/A N/A 1.225±0.38 0.234±0.16 N/A
ENSMUST00000138388 N/A N/A N/A N/A 0.265±0.00 N/A N/A 0.179±0.07 0.033±0.00 N/A N/A N/A N/A N/A
ENSMUST00000155779 N/A N/A N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090194 ENSMUST00000162239 2.454±0.78 N/A N/A N/A 1.176±0.09 1.119±0.67 N/A 0.914±0.65 0.804±0.47 0.754±0.23 0.465±0.00 1.250±0.45 N/A 0.679±0.19

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