C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00035Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144550-ENSG00000156983 CGP 9606 3:9703807-9748018
GeneTranscriptPositionBiotype
ENSG00000144550 (CPNE9)
copine family member IX 		ENST00000273027 (CPNE9-004) 9715340-9726713 protein_coding
ENST00000383831 (CPNE9-002) 9703826-9727450 protein_coding
ENST00000383832 (CPNE9-001) 9703807-9729908 protein_coding
ENST00000491802 (CPNE9-003) 9703833-9705033 retained_intron
ENST00000613455 (CPNE9-201) 9703826-9727441 protein_coding
ENSG00000156983 (BRPF1)
bromodomain and PHD finger containing, 1 		ENST00000383829 (BRPF1-001) 9731745-9748018 protein_coding
ENST00000420291 (BRPF1-005) 9731788-9734441 protein_coding
ENST00000424362 (BRPF1-003) 9731745-9748015 protein_coding
ENST00000426583 (BRPF1-006) 9732480-9734456 protein_coding
ENST00000433861 (BRPF1-002) 9731729-9747873 protein_coding
ENST00000457855 (BRPF1-004) 9734130-9748001 protein_coding
ENST00000469066 (BRPF1-008) 9743256-9743795 processed_transcript
ENST00000497565 (BRPF1-007) 9745044-9747229 retained_intron
CIL_00035Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030270-ENSMUSG00000001632 CGP 10090 6:113282307-113324857
GeneTranscriptPositionBiotype
ENSMUSG00000001632 (Brpf1)
bromodomain and PHD finger containing, 1 		ENSMUST00000113117 (Brpf1-002) 113307224-113324841 protein_coding
ENSMUST00000113119 (Brpf1-001) 113307192-113324702 protein_coding
ENSMUST00000113121 (Brpf1-004) 113307192-113324721 protein_coding
ENSMUST00000113122 (Brpf1-003) 113307181-113324857 protein_coding
ENSMUST00000124530 (Brpf1-006) 113317158-113318453 retained_intron
ENSMUST00000131594 (Brpf1-005) 113320541-113324702 retained_intron
ENSMUST00000138737 (Brpf1-007) 113320383-113322306 retained_intron
ENSMUSG00000030270 (Cpne9)
copine family member IX 		ENSMUST00000041203 (Cpne9-001) 113282307-113305569 protein_coding
ENSMUST00000124574 (Cpne9-006) 113282335-113283429 retained_intron
ENSMUST00000128148 (Cpne9-007) 113282339-113283507 processed_transcript
ENSMUST00000130191 (Cpne9-003) 113282310-113304824 nonsense_mediated_decay
ENSMUST00000132372 (Cpne9-002) 113282307-113305627 retained_intron
ENSMUST00000134523 (Cpne9-004) 113288504-113305571 retained_intron
ENSMUST00000136728 (Cpne9-009) 113294325-113301679 processed_transcript
ENSMUST00000138388 (Cpne9-008) 113282365-113284424 processed_transcript
ENSMUST00000155779 (Cpne9-005) 113282364-113283969 processed_transcript
ENSMUSG00000085012 (Gm15492)
predicted gene 15492 		ENSMUST00000156734 (Gm15492-001) 113308666-113326747 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00035Z_0001ENSG00000144550ENST00000273027ENST00000383831ENST00000383832ENST00000491802ENST00000613455ENSG00000156983ENST00000383829ENST00000420291ENST00000424362ENST00000426583ENST00000433861ENST00000457855ENST00000469066ENST00000497565CIL_00035Z_0002ENSMUSG00000001632ENSMUST00000113117ENSMUST00000113119ENSMUST00000113121ENSMUST00000113122ENSMUST00000124530ENSMUST00000131594ENSMUST00000138737ENSMUSG00000030270ENSMUST00000041203ENSMUST00000124574ENSMUST00000128148ENSMUST00000130191ENSMUST00000132372ENSMUST00000134523ENSMUST00000136728ENSMUST00000138388ENSMUST00000155779ENSMUSG00000085012ENSMUST00000156734
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00035Z_0001ENSG00000144550ENST00000273027ENST00000383832ENST00000491802ENST00000613455ENSG00000156983ENST00000383829ENST00000424362ENST00000433861ENST00000457855ENST00000497565CIL_00035Z_0002ENSMUSG00000001632ENSMUST00000113117ENSMUST00000113119ENSMUST00000113121ENSMUST00000113122ENSMUST00000131594ENSMUSG00000030270ENSMUST00000041203ENSMUST00000124574ENSMUST00000128148ENSMUST00000130191ENSMUST00000132372ENSMUST00000134523ENSMUST00000136728ENSMUST00000138388ENSMUST00000155779ENSMUSG00000085012ENSMUST00000156734
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144550 ENST00000273027 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.251±0.01 0.099±0.02 0.790±0.00
ENST00000383831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000383832 0.068±0.00 0.247±0.00 N/A 5.343±2.58 0.048±0.00 0.168±0.00 N/A N/A 0.029±0.00 0.023±0.01 N/A 0.058±0.04 0.027±0.00 0.216±0.07
ENST00000491802 N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000613455 N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 0.072±0.00
ENSG00000156983 ENST00000383829 0.439±0.00 1.159±0.00 N/A N/A 2.649±0.00 N/A 0.336±0.00 N/A N/A 2.577±0.00 N/A 2.241±0.87 1.311±0.74 N/A
ENST00000420291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424362 2.433±0.00 3.064±0.00 N/A N/A 0.259±0.00 1.503±0.00 N/A 2.849±0.00 N/A N/A 3.635±0.00 2.008±1.21 2.196±0.64 4.813±1.73
ENST00000426583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433861 0.554±0.00 N/A 0.632±0.00 0.723±0.00 N/A N/A 0.439±0.08 N/A N/A 1.113±0.21 2.041±0.00 1.168±0.48 2.906±0.00 9.027±0.00
ENST00000457855 N/A 2.682±0.00 N/A 2.469±0.00 0.843±0.14 1.020±0.74 1.496±0.00 1.161±0.84 0.966±0.60 N/A N/A 1.086±0.25 1.756±0.00 5.078±0.00
ENST00000469066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497565 N/A N/A N/A N/A N/A N/A N/A N/A 2.268±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001632 ENSMUST00000113117 1.576±0.36 N/A 1.150±0.21 2.399±1.14 1.686±0.39 1.155±0.23 1.323±0.00 1.008±0.26 1.820±1.06 1.488±0.17 0.550±0.19 4.628±2.51 3.833±1.97 2.008±0.12
ENSMUST00000113119 2.362±0.91 3.085±0.29 1.888±0.06 3.443±0.82 3.653±1.29 2.704±0.76 0.799±0.02 1.667±0.62 2.102±0.49 2.938±0.59 0.680±0.29 3.020±0.97 1.925±0.77 N/A
ENSMUST00000113121 2.342±0.81 2.325±0.66 N/A 3.240±0.19 2.726±0.98 2.873±0.95 1.449±0.45 1.792±0.63 1.869±0.75 2.326±0.02 0.517±0.15 3.198±1.09 5.403±2.28 2.358±0.85
ENSMUST00000113122 1.688±0.70 2.497±0.62 3.799±0.54 4.888±0.08 3.377±1.25 2.339±1.01 0.986±0.34 1.370±0.67 2.328±0.86 2.651±0.82 1.899±0.45 4.360±1.69 4.603±2.02 1.727±0.16
ENSMUST00000124530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131594 N/A N/A N/A N/A 1.514±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030270 ENSMUST00000041203 0.010±0.00 0.417±0.19 N/A N/A N/A N/A 0.013±0.01 N/A 0.013±0.00 0.021±0.00 0.020±0.00 0.603±0.00 N/A N/A
ENSMUST00000124574 N/A N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A 0.361±0.00 N/A
ENSMUST00000128148 N/A 2.073±0.87 N/A N/A N/A N/A N/A 0.154±0.00 0.108±0.03 N/A N/A N/A N/A N/A
ENSMUST00000130191 0.020±0.00 0.666±0.24 0.010±0.00 6.093±7.86 0.090±0.00 N/A 0.011±0.00 0.077±0.03 0.018±0.01 N/A N/A 0.190±0.13 0.062±0.06 0.043±0.00
ENSMUST00000132372 0.024±0.00 N/A N/A N/A 0.020±0.00 N/A N/A 0.019±0.00 0.007±0.00 N/A N/A N/A 0.026±0.00 0.093±0.03
ENSMUST00000134523 0.021±0.00 0.277±0.14 0.012±0.00 0.680±0.57 0.023±0.01 N/A 0.018±0.00 0.011±0.00 0.004±0.00 0.019±0.01 0.011±0.00 0.058±0.05 0.033±0.01 0.133±0.02
ENSMUST00000136728 0.069±0.00 N/A 0.047±0.00 N/A 0.194±0.00 N/A N/A 0.264±0.21 0.026±0.00 N/A N/A 1.225±0.38 0.234±0.16 N/A
ENSMUST00000138388 N/A N/A N/A N/A 0.265±0.00 N/A N/A 0.179±0.07 0.033±0.00 N/A N/A N/A N/A N/A
ENSMUST00000155779 N/A N/A N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085012 ENSMUST00000156734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.080±12.39

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