C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin tyrosine ligase-like family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030276 Ttll3 10090 + 6:113389260-113414583 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032414 Ttll3-009 113392458-113414562 protein_coding
  ENSMUST00000038889 Ttll3-201 113392497-113414569 protein_coding
  ENSMUST00000124368 Ttll3-007 113412831-113414558 processed_transcript
  ENSMUST00000129582 Ttll3-003 113393177-113409899 nonsense_mediated_decay
  ENSMUST00000129894 Ttll3-008 113390737-113398870 processed_transcript
  ENSMUST00000131694 Ttll3-006 113409206-113409899 protein_coding
  ENSMUST00000138131 Ttll3-004 113393160-113414583 protein_coding
  ENSMUST00000140505 Ttll3-002 113389260-113399448 retained_intron
  ENSMUST00000146262 Ttll3-005 113393081-113399470 retained_intron
  ENSMUST00000161831 Ttll3-001 113397758-113414562 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLungOvaryTestisENSMUST00000032414ENSMUST00000129894ENSMUST00000138131ENSMUST00000161831
Transcript ID Brain Breast Lung Ovary Testis
ENSMUST00000032414 3.942±0.00 N/A 6.757±1.15 7.032±1.61 21.931±7.11
ENSMUST00000129894 N/A N/A N/A N/A 44.830±0.00
ENSMUST00000138131 N/A N/A N/A N/A 12.421±5.47
ENSMUST00000161831 N/A 1.784±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WP CIL_0002WP_0002 CGP 6:113366025-113390448
CIL_0005IQ CIL_0005IQ_0002 CGP 6:113378113-113414583
CIL_0002WY CIL_0002WY_0002 CGP 6:113389260-113419348

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005874 IEA microtubule
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0006464 IEA cellular protein modification process
GO:0015630 IDA microtubule cytoskeleton
GO:0018094 IDA protein polyglycylation
GO:0035082 ISS axoneme assembly
GO:0042384 ISS cilium assembly
GO:0070735 IDA protein-glycine ligase activity
GO:0070736 IDA protein-glycine ligase activity, initiating

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053728 ttll3 tubulin tyrosine ligase-like family, member 3 protein_coding Danio_rerio
ENSG00000214021 TTLL3 tubulin tyrosine ligase-like family, member 3 protein_coding Homo_sapiens
ENSG00000250151 ARPC4-TTLL3 ARPC4-TTLL3 readthrough protein_coding Homo_sapiens

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