C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002WP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171148-ENSG00000241553 CGP 9606 3:9779860-9807726
GeneTranscriptPositionBiotype
ENSG00000171148 (TADA3)
transcriptional adaptor 3 		ENST00000301964 (TADA3-001) 9779860-9792747 protein_coding
ENST00000343450 (TADA3-002) 9783128-9792736 protein_coding
ENST00000439043 (TADA3-009) 9789885-9792783 protein_coding
ENST00000440161 (TADA3-004) 9780256-9793011 protein_coding
ENST00000492103 (TADA3-003) 9779967-9788083 retained_intron
ENST00000492635 (TADA3-008) 9789703-9792408 processed_transcript
ENSG00000241553 (ARPC4)
actin related protein 2/3 complex, subunit 4, 20kDa 		ENST00000397261 (ARPC4-001) 9792558-9807726 protein_coding
ENST00000417500 (ARPC4-003) 9793082-9806436 nonsense_mediated_decay
ENST00000433034 (ARPC4-010) 9793117-9806572 protein_coding
ENST00000440787 (ARPC4-002) 9793093-9806417 nonsense_mediated_decay
ENST00000467289 (ARPC4-008) 9793095-9804214 retained_intron
ENST00000479956 (ARPC4-004) 9793082-9798121 retained_intron
ENST00000485273 (ARPC4-009) 9793096-9804013 protein_coding
ENST00000498623 (ARPC4-005) 9792495-9806442 protein_coding
CIL_0002WP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048930-ENSMUSG00000079426 CGP 10090 6:113366025-113390448
GeneTranscriptPositionBiotype
ENSMUSG00000030276 (Ttll3)
tubulin tyrosine ligase-like family, member 3 		ENSMUST00000032414 (Ttll3-009) 113392458-113414562 protein_coding
ENSMUST00000038889 (Ttll3-201) 113392497-113414569 protein_coding
ENSMUST00000124368 (Ttll3-007) 113412831-113414558 processed_transcript
ENSMUST00000129582 (Ttll3-003) 113393177-113409899 nonsense_mediated_decay
ENSMUST00000129894 (Ttll3-008) 113390737-113398870 processed_transcript
ENSMUST00000131694 (Ttll3-006) 113409206-113409899 protein_coding
ENSMUST00000138131 (Ttll3-004) 113393160-113414583 protein_coding
ENSMUST00000140505 (Ttll3-002) 113389260-113399448 retained_intron
ENSMUST00000146262 (Ttll3-005) 113393081-113399470 retained_intron
ENSMUST00000161831 (Ttll3-001) 113397758-113414562 retained_intron
ENSMUSG00000048930 (Tada3)
transcriptional adaptor 3 		ENSMUST00000032410 (Tada3-001) 113366025-113377883 protein_coding
ENSMUST00000043333 (Tada3-005) 113366655-113377376 protein_coding
ENSMUST00000099118 (Tada3-004) 113366655-113377517 protein_coding
ENSMUST00000113106 (Tada3-002) 113374483-113377739 protein_coding
ENSMUST00000113107 (Tada3-003) 113374386-113377739 protein_coding
ENSMUST00000125414 (Tada3-006) 113366916-113371142 processed_transcript
ENSMUSG00000079426 (Arpc4)
actin related protein 2/3 complex, subunit 4 		ENSMUST00000102708 (Arpc4-002) 113378147-113389652 processed_transcript
ENSMUST00000138722 (Arpc4-003) 113378570-113389015 processed_transcript
ENSMUST00000156898 (Arpc4-001) 113378115-113390448 protein_coding
ENSMUST00000171058 (Arpc4-201) 113378113-113390447 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WP_0001ENSG00000171148ENST00000301964ENST00000343450ENST00000439043ENST00000440161ENST00000492103ENST00000492635ENSG00000241553ENST00000397261ENST00000417500ENST00000433034ENST00000440787ENST00000467289ENST00000479956ENST00000485273ENST00000498623CIL_0002WP_0002ENSMUSG00000030276ENSMUST00000032414ENSMUST00000038889ENSMUST00000124368ENSMUST00000129582ENSMUST00000129894ENSMUST00000131694ENSMUST00000138131ENSMUST00000140505ENSMUST00000146262ENSMUST00000161831ENSMUSG00000048930ENSMUST00000032410ENSMUST00000043333ENSMUST00000099118ENSMUST00000113106ENSMUST00000113107ENSMUST00000125414ENSMUSG00000079426ENSMUST00000102708ENSMUST00000138722ENSMUST00000156898ENSMUST00000171058
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WP_0001ENSG00000171148ENST00000301964ENST00000440161ENST00000492635ENSG00000241553ENST00000397261ENST00000433034ENST00000467289ENST00000498623CIL_0002WP_0002ENSMUSG00000030276ENSMUST00000032414ENSMUST00000129894ENSMUST00000138131ENSMUST00000161831ENSMUSG00000048930ENSMUST00000032410ENSMUST00000043333ENSMUST00000099118ENSMUST00000113106ENSMUST00000113107ENSMUSG00000079426ENSMUST00000102708ENSMUST00000138722ENSMUST00000156898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171148 ENST00000301964 28.386±0.00 42.487±0.00 N/A 25.226±0.00 32.672±0.00 35.100±0.00 16.029±13.94 38.337±0.00 N/A N/A N/A 92.121±3.27 32.713±8.74 56.794±0.00
ENST00000343450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440161 N/A N/A N/A 20.522±0.00 10.274±0.00 14.477±0.00 1.791±0.00 7.566±0.00 8.443±0.00 N/A 3.349±0.00 24.298±13.15 29.430±0.00 110.757±0.00
ENST00000492103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.789±0.00 N/A N/A N/A
ENSG00000241553 ENST00000397261 37.950±0.00 23.466±0.00 N/A 18.864±0.00 N/A N/A 1.474±0.00 38.109±0.00 N/A 33.210±0.00 21.760±0.00 64.786±0.00 26.114±12.71 N/A
ENST00000417500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433034 N/A N/A N/A N/A N/A N/A N/A 12.716±0.00 N/A N/A 4.285±0.00 45.000±0.00 50.280±8.92 N/A
ENST00000440787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467289 N/A N/A N/A N/A N/A N/A 4.852±0.00 N/A 19.656±0.00 N/A 5.938±0.00 N/A N/A N/A
ENST00000479956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498623 88.641±0.00 N/A N/A 68.185±0.00 81.151±0.00 85.444±0.00 N/A 85.943±0.00 29.185±0.00 78.422±0.00 39.038±0.00 121.145±0.00 N/A 87.629±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030276 ENSMUST00000032414 N/A N/A N/A 3.942±0.00 N/A N/A N/A N/A N/A 6.757±1.15 N/A 7.032±1.61 N/A 21.931±7.11
ENSMUST00000038889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.830±0.00
ENSMUST00000131694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.421±5.47
ENSMUST00000140505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161831 N/A N/A N/A N/A 1.784±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048930 ENSMUST00000032410 2.827±0.48 7.093±0.45 4.877±0.00 6.111±0.73 3.090±1.25 4.204±0.83 1.043±0.34 3.119±0.69 2.159±1.46 3.201±1.10 0.773±0.07 4.595±1.51 7.577±2.54 6.181±2.24
ENSMUST00000043333 6.021±0.73 7.660±0.83 8.690±1.89 17.700±5.42 5.136±1.83 8.084±1.36 3.462±0.37 5.366±0.87 4.399±3.44 7.851±0.12 2.154±0.81 10.121±2.44 15.348±5.30 11.153±1.38
ENSMUST00000099118 N/A N/A N/A N/A N/A N/A N/A 3.213±0.00 1.579±0.48 N/A 1.274±0.17 5.204±0.47 N/A N/A
ENSMUST00000113106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.825±0.87 N/A N/A
ENSMUST00000113107 N/A N/A N/A 4.976±0.00 1.564±0.00 N/A N/A N/A N/A N/A 0.960±0.00 3.013±0.41 N/A N/A
ENSMUST00000125414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079426 ENSMUST00000102708 15.884±1.82 16.931±1.66 20.300±3.94 33.958±4.94 19.909±7.99 28.227±1.74 4.445±0.95 21.937±0.63 22.306±10.84 17.973±0.97 5.660±1.85 25.406±5.67 59.224±32.64 N/A
ENSMUST00000138722 32.723±8.50 N/A 24.971±0.53 17.451±2.70 24.951±2.21 N/A 8.212±1.36 20.447±0.33 8.283±0.00 N/A 6.765±2.28 41.559±17.39 61.892±40.51 N/A
ENSMUST00000156898 32.513±4.68 45.975±6.79 24.066±0.50 15.465±8.78 37.640±21.06 58.982±8.03 7.055±2.90 30.826±11.30 14.314±4.03 33.552±6.73 2.510±0.57 34.311±10.83 26.645±15.69 N/A
ENSMUST00000171058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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