C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002WY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000214021-ENSG00000214021 CGP 9606 3:9808086-9855138
GeneTranscriptPositionBiotype
ENSG00000156990 (RPUSD3)
RNA pseudouridylate synthase domain containing 3 		ENST00000383820 (RPUSD3-001) 9837849-9844016 protein_coding
ENST00000418713 (RPUSD3-011) 9839941-9844002 protein_coding
ENST00000423108 (RPUSD3-006) 9837849-9840617 protein_coding
ENST00000424438 (RPUSD3-010) 9838020-9843942 protein_coding
ENST00000427174 (RPUSD3-009) 9838165-9843986 protein_coding
ENST00000433535 (RPUSD3-002) 9837849-9844014 protein_coding
ENST00000433555 (RPUSD3-013) 9841408-9843976 protein_coding
ENST00000433972 (RPUSD3-004) 9841257-9844059 protein_coding
ENST00000451405 (RPUSD3-014) 9841698-9843995 nonsense_mediated_decay
ENST00000460909 (RPUSD3-017) 9843151-9844016 retained_intron
ENST00000464783 (RPUSD3-007) 9837882-9840866 retained_intron
ENST00000466141 (RPUSD3-008) 9837894-9839713 retained_intron
ENST00000472381 (RPUSD3-012) 9840682-9844018 retained_intron
ENST00000473522 (RPUSD3-016) 9841854-9843737 processed_transcript
ENST00000475470 (RPUSD3-005) 9839901-9843571 retained_intron
ENST00000484134 (RPUSD3-003) 9839901-9844016 retained_intron
ENST00000485705 (RPUSD3-015) 9841736-9844602 processed_transcript
CIL_0002WY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030276-ENSMUSG00000051169 CGP 10090 6:113389260-113419348
GeneTranscriptPositionBiotype
ENSMUSG00000030276 (Ttll3)
tubulin tyrosine ligase-like family, member 3 		ENSMUST00000032414 (Ttll3-009) 113392458-113414562 protein_coding
ENSMUST00000038889 (Ttll3-201) 113392497-113414569 protein_coding
ENSMUST00000124368 (Ttll3-007) 113412831-113414558 processed_transcript
ENSMUST00000129582 (Ttll3-003) 113393177-113409899 nonsense_mediated_decay
ENSMUST00000129894 (Ttll3-008) 113390737-113398870 processed_transcript
ENSMUST00000131694 (Ttll3-006) 113409206-113409899 protein_coding
ENSMUST00000138131 (Ttll3-004) 113393160-113414583 protein_coding
ENSMUST00000140505 (Ttll3-002) 113389260-113399448 retained_intron
ENSMUST00000146262 (Ttll3-005) 113393081-113399470 retained_intron
ENSMUST00000161831 (Ttll3-001) 113397758-113414562 retained_intron
ENSMUSG00000051169 (Rpusd3)
RNA pseudouridylate synthase domain containing 3 		ENSMUST00000060634 (Rpusd3-002) 113415329-113419319 protein_coding
ENSMUST00000113092 (Rpusd3-001) 113415319-113419348 protein_coding
ENSMUST00000124078 (Rpusd3-009) 113416789-113419319 retained_intron
ENSMUST00000129047 (Rpusd3-003) 113416106-113419319 protein_coding
ENSMUST00000129560 (Rpusd3-008) 113417223-113419331 protein_coding
ENSMUST00000134853 (Rpusd3-006) 113417196-113419048 processed_transcript
ENSMUST00000147726 (Rpusd3-005) 113416310-113419310 protein_coding
ENSMUST00000150452 (Rpusd3-004) 113418304-113419323 retained_intron
ENSMUST00000151618 (Rpusd3-007) 113416894-113419314 protein_coding
ENSMUSG00000079426 (Arpc4)
actin related protein 2/3 complex, subunit 4 		ENSMUST00000102708 (Arpc4-002) 113378147-113389652 processed_transcript
ENSMUST00000138722 (Arpc4-003) 113378570-113389015 processed_transcript
ENSMUST00000156898 (Arpc4-001) 113378115-113390448 protein_coding
ENSMUST00000171058 (Arpc4-201) 113378113-113390447 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WY_0001ENSG00000156990ENST00000383820ENST00000418713ENST00000423108ENST00000424438ENST00000427174ENST00000433535ENST00000433555ENST00000433972ENST00000451405ENST00000460909ENST00000464783ENST00000466141ENST00000472381ENST00000473522ENST00000475470ENST00000484134ENST00000485705CIL_0002WY_0002ENSMUSG00000030276ENSMUST00000032414ENSMUST00000038889ENSMUST00000124368ENSMUST00000129582ENSMUST00000129894ENSMUST00000131694ENSMUST00000138131ENSMUST00000140505ENSMUST00000146262ENSMUST00000161831ENSMUSG00000051169ENSMUST00000060634ENSMUST00000113092ENSMUST00000124078ENSMUST00000129047ENSMUST00000129560ENSMUST00000134853ENSMUST00000147726ENSMUST00000150452ENSMUST00000151618ENSMUSG00000079426ENSMUST00000102708ENSMUST00000138722ENSMUST00000156898ENSMUST00000171058
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002WY_0001ENSG00000156990ENST00000383820ENST00000418713ENST00000423108ENST00000427174ENST00000433535ENST00000433555ENST00000433972ENST00000451405ENST00000466141ENST00000472381ENST00000473522ENST00000475470ENST00000484134CIL_0002WY_0002ENSMUSG00000030276ENSMUST00000032414ENSMUST00000129894ENSMUST00000138131ENSMUST00000161831ENSMUSG00000051169ENSMUST00000060634ENSMUST00000113092ENSMUST00000124078ENSMUST00000129047ENSMUST00000134853ENSMUST00000147726ENSMUST00000150452ENSMUSG00000079426ENSMUST00000102708ENSMUST00000138722ENSMUST00000156898
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156990 ENST00000383820 8.024±0.00 4.231±0.00 N/A 3.300±0.43 5.200±4.89 6.537±0.00 5.830±0.00 11.530±0.00 8.268±0.00 3.964±0.00 9.296±6.79 10.946±2.67 16.479±8.61 23.929±0.91
ENST00000418713 N/A N/A N/A N/A 0.606±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.988±0.00 2.045±0.00 N/A N/A
ENST00000424438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427174 N/A N/A N/A 5.399±0.00 N/A N/A 0.409±0.00 N/A 1.410±0.00 N/A N/A N/A 3.400±0.00 N/A
ENST00000433535 N/A N/A N/A N/A N/A N/A 2.182±0.00 N/A 4.419±0.00 0.304±0.00 12.023±0.00 N/A N/A N/A
ENST00000433555 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.862±0.54 N/A 4.854±0.00 N/A N/A
ENST00000433972 3.702±0.00 4.398±0.00 0.595±0.00 4.634±2.21 4.596±0.00 2.997±2.70 2.477±0.00 2.839±1.90 0.644±0.00 1.506±0.00 N/A 3.169±2.48 2.087±0.46 5.830±0.00
ENST00000451405 N/A N/A N/A N/A N/A N/A 0.441±0.00 N/A 0.673±0.00 N/A N/A N/A N/A N/A
ENST00000460909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466141 N/A 3.810±0.00 N/A N/A 0.350±0.00 0.531±0.00 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000472381 N/A N/A 1.044±0.00 N/A 0.778±0.00 1.800±0.00 N/A 1.352±0.00 N/A 0.393±0.00 N/A N/A N/A N/A
ENST00000473522 N/A N/A N/A N/A N/A N/A 0.637±0.00 N/A 1.067±0.00 N/A N/A N/A N/A N/A
ENST00000475470 N/A N/A 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484134 N/A N/A N/A N/A N/A 0.159±0.00 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000485705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030276 ENSMUST00000032414 N/A N/A N/A 3.942±0.00 N/A N/A N/A N/A N/A 6.757±1.15 N/A 7.032±1.61 N/A 21.931±7.11
ENSMUST00000038889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.830±0.00
ENSMUST00000131694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.421±5.47
ENSMUST00000140505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161831 N/A N/A N/A N/A 1.784±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051169 ENSMUST00000060634 3.614±1.59 2.058±0.49 1.273±0.07 1.493±0.51 2.729±0.55 3.641±0.57 1.625±0.48 6.770±1.29 2.942±1.49 1.806±0.00 1.657±0.72 2.380±0.89 3.180±1.88 1.175±0.00
ENSMUST00000113092 7.306±2.75 7.524±2.38 3.522±0.86 3.257±1.87 11.544±2.39 6.428±1.15 2.747±0.92 15.467±5.32 10.303±5.21 3.945±0.93 2.890±0.78 4.794±1.44 5.322±4.45 4.540±0.52
ENSMUST00000124078 N/A N/A N/A 1.102±0.00 N/A N/A N/A N/A N/A N/A N/A 2.135±0.51 N/A 0.659±0.00
ENSMUST00000129047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.978±0.77 N/A 1.861±0.14
ENSMUST00000129560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.327±0.00 N/A N/A
ENSMUST00000147726 N/A N/A N/A N/A 2.911±0.00 N/A N/A N/A N/A N/A N/A 4.397±0.00 1.175±0.00 N/A
ENSMUST00000150452 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.289±0.00 N/A 1.600±0.00 N/A N/A
ENSMUST00000151618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079426 ENSMUST00000102708 15.884±1.82 16.931±1.66 20.300±3.94 33.958±4.94 19.909±7.99 28.227±1.74 4.445±0.95 21.937±0.63 22.306±10.84 17.973±0.97 5.660±1.85 25.406±5.67 59.224±32.64 N/A
ENSMUST00000138722 32.723±8.50 N/A 24.971±0.53 17.451±2.70 24.951±2.21 N/A 8.212±1.36 20.447±0.33 8.283±0.00 N/A 6.765±2.28 41.559±17.39 61.892±40.51 N/A
ENSMUST00000156898 32.513±4.68 45.975±6.79 24.066±0.50 15.465±8.78 37.640±21.06 58.982±8.03 7.055±2.90 30.826±11.30 14.314±4.03 33.552±6.73 2.510±0.57 34.311±10.83 26.645±15.69 N/A
ENSMUST00000171058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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