C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caprin family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030309 Caprin2 10090 - 6:148842492-148896237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072324 Caprin2-003 148842493-148896150 protein_coding
  ENSMUST00000111569 Caprin2-001 148842492-148896237 protein_coding
  ENSMUST00000122909 Caprin2-004 148894170-148895609 processed_transcript
  ENSMUST00000127941 Caprin2-008 148842493-148851396 processed_transcript
  ENSMUST00000132535 Caprin2-002 148844039-148849184 retained_intron
  ENSMUST00000139914 Caprin2-006 148877915-148895459 protein_coding
  ENSMUST00000151640 Caprin2-007 148844567-148851367 processed_transcript
  ENSMUST00000154971 Caprin2-005 148847610-148860588 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072324ENSMUST00000111569ENSMUST00000122909ENSMUST00000127941ENSMUST00000139914ENSMUST00000151640
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072324 1.556±1.17 1.812±0.51 0.956±0.00 2.516±0.00 1.433±0.75 0.421±0.00 0.538±0.07 0.739±0.08 1.114±0.68 0.710±0.30 0.257±0.11 2.419±0.64 1.293±0.39 0.984±0.00
ENSMUST00000111569 1.290±0.28 0.606±0.15 1.815±0.10 1.215±0.51 0.818±0.20 0.901±0.17 0.493±0.16 0.789±0.38 0.878±0.60 0.396±0.14 0.527±0.14 2.223±1.24 0.820±0.19 2.771±0.49
ENSMUST00000122909 N/A N/A N/A N/A N/A N/A N/A N/A 0.449±0.00 N/A N/A N/A N/A N/A
ENSMUST00000127941 N/A 2.204±0.00 N/A N/A N/A N/A N/A N/A 0.369±0.18 N/A N/A N/A N/A N/A
ENSMUST00000139914 N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A N/A N/A
ENSMUST00000151640 N/A 3.421±0.00 N/A N/A N/A N/A N/A N/A 0.621±0.27 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HS CIL_0006HS_0002 CGP 6:148770683-148896237
CIL_00062C CIL_00062C_0002 CGP 6:148842492-148946467

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005102 IEA receptor binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0005739 ISS mitochondrion
GO:0005813 IEA centrosome
GO:0017148 IEA negative regulation of translation
GO:0030308 ISS negative regulation of cell growth
GO:0032092 IEA positive regulation of protein binding
GO:0033138 IEA positive regulation of peptidyl-serine phosphorylation
GO:0043235 IEA receptor complex
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0061003 IMP positive regulation of dendritic spine morphogenesis
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020749 caprin2 caprin family member 2 protein_coding Danio_rerio
ENSG00000110888 CAPRIN2 caprin family member 2 protein_coding Homo_sapiens

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