C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caprin family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110888 CAPRIN2 9606 - 12:30709552-30754951 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298892 CAPRIN2-001 30709553-30754514 protein_coding
  ENST00000395805 CAPRIN2-004 30709554-30754311 protein_coding
  ENST00000417045 CAPRIN2-005 30710340-30754311 protein_coding
  ENST00000433722 CAPRIN2-015 30709553-30735014 protein_coding
  ENST00000454014 CAPRIN2-003 30709553-30754514 nonsense_mediated_decay
  ENST00000534897 CAPRIN2-012 30731470-30754630 processed_transcript
  ENST00000537108 CAPRIN2-002 30716623-30754951 protein_coding
  ENST00000537553 CAPRIN2-006 30709552-30753659 nonsense_mediated_decay
  ENST00000538387 CAPRIN2-014 30728668-30735147 processed_transcript
  ENST00000540436 CAPRIN2-008 30735154-30754888 protein_coding
  ENST00000540584 CAPRIN2-009 30735176-30754860 protein_coding
  ENST00000541765 CAPRIN2-007 30733660-30754939 protein_coding
  ENST00000542550 CAPRIN2-010 30734976-30754853 protein_coding
  ENST00000543380 CAPRIN2-013 30733707-30751655 protein_coding
  ENST00000546129 CAPRIN2-011 30734955-30754824 processed_transcript
  ENST00000548676 CAPRIN2-017 30709553-30751124 nonsense_mediated_decay
  ENST00000553026 CAPRIN2-016 30728379-30731448 retained_intron
  ENST00000614865 CAPRIN2-018 30714927-30715377 retained_intron
  ENST00000620681 CAPRIN2-019 30716290-30728778 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298892ENST00000395805ENST00000417045ENST00000433722ENST00000454014ENST00000537108ENST00000537553ENST00000540436ENST00000548676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298892 N/A N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A 0.130±0.00 N/A
ENST00000395805 N/A N/A N/A 1.337±0.00 0.407±0.00 N/A 0.585±0.00 N/A N/A N/A N/A 1.121±0.20 0.198±0.00 1.717±0.00
ENST00000417045 N/A N/A N/A 0.725±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433722 1.369±0.00 N/A N/A 1.560±0.00 N/A 1.247±0.00 N/A 0.798±0.00 0.247±0.00 N/A 0.438±0.00 1.889±0.00 0.340±0.01 5.011±0.00
ENST00000454014 N/A N/A 1.043±0.00 0.557±0.00 0.942±0.00 0.450±0.00 N/A 1.057±0.00 0.741±0.00 0.542±0.00 N/A 0.777±0.00 N/A 2.891±0.00
ENST00000537108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A
ENST00000537553 N/A N/A 0.290±0.00 0.529±0.18 0.270±0.00 N/A 0.260±0.00 0.580±0.00 0.338±0.00 N/A N/A 0.810±0.34 0.108±0.00 N/A
ENST00000540436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.166±0.00 N/A N/A N/A
ENST00000548676 0.610±0.00 1.057±0.00 N/A 1.142±0.00 2.222±0.00 0.570±0.00 N/A 1.865±0.00 0.882±0.05 N/A N/A 2.494±1.40 0.532±0.18 3.711±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HS CIL_0006HS_0001 CGP 12:30628988-30754951

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0003824 IEA catalytic activity
GO:0005102 IPI receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005813 IDA centrosome
GO:0017148 IEA negative regulation of translation
GO:0030308 IDA negative regulation of cell growth
GO:0032092 IDA positive regulation of protein binding
GO:0033138 IDA positive regulation of peptidyl-serine phosphorylation
GO:0043235 IDA receptor complex
GO:0044237 IEA cellular metabolic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050775 ISS positive regulation of dendrite morphogenesis
GO:0061003 ISS positive regulation of dendritic spine morphogenesis
GO:0090263 IDA positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020749 caprin2 caprin family member 2 protein_coding Danio_rerio
ENSMUSG00000030309 Caprin2 caprin family member 2 protein_coding Mus_musculus

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