C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caprin family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111569 Caprin2-001 ENSMUSG00000030309 10090 - 6:148842492-148896237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111569 1.290±0.28 0.606±0.15 1.815±0.10 1.215±0.51 0.818±0.20 0.901±0.17 0.493±0.16 0.789±0.38 0.878±0.60 0.396±0.14 0.527±0.14 2.223±1.24 0.820±0.19 2.771±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HS CIL_0006HS_0002 CGP 6:148770683-148896237
CIL_00062C CIL_00062C_0002 CGP 6:148842492-148946467

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005102 IEA receptor binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0005739 ISS mitochondrion
GO:0005813 IEA centrosome
GO:0017148 IEA negative regulation of translation
GO:0030308 ISS negative regulation of cell growth
GO:0032092 IEA positive regulation of protein binding
GO:0033138 IEA positive regulation of peptidyl-serine phosphorylation
GO:0043235 IEA receptor complex
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0061003 IMP positive regulation of dendritic spine morphogenesis
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298892 CAPRIN2-001 protein_coding Homo_sapiens 0 1794
ENST00000395805 CAPRIN2-004 protein_coding Homo_sapiens 0 1657
ENST00000417045 CAPRIN2-005 protein_coding Homo_sapiens 0 2305
ENST00000433722 CAPRIN2-015 protein_coding Homo_sapiens 0 1524
ENST00000454014 CAPRIN2-003 nonsense_mediated_decay Homo_sapiens 0 2353
ENST00000534897 CAPRIN2-012 processed_transcript Homo_sapiens 0 529
ENST00000537108 CAPRIN2-002 protein_coding Homo_sapiens 0 1893
ENST00000537553 CAPRIN2-006 nonsense_mediated_decay Homo_sapiens 0 981
ENST00000538387 CAPRIN2-014 processed_transcript Homo_sapiens 0 361
ENST00000540436 CAPRIN2-008 protein_coding Homo_sapiens 0 525
ENST00000540584 CAPRIN2-009 protein_coding Homo_sapiens 0 486
ENST00000541765 CAPRIN2-007 protein_coding Homo_sapiens 0 625
ENST00000542550 CAPRIN2-010 protein_coding Homo_sapiens 0 780
ENST00000543380 CAPRIN2-013 protein_coding Homo_sapiens 0 538
ENST00000546129 CAPRIN2-011 processed_transcript Homo_sapiens 0 527
ENST00000548676 CAPRIN2-017 nonsense_mediated_decay Homo_sapiens 0 2362
ENST00000553026 CAPRIN2-016 retained_intron Homo_sapiens 0 435
ENST00000620681 CAPRIN2-019 processed_transcript Homo_sapiens 0 375

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