C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 122
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030323 Ift122 10090 + 6:115853470-115926699 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038234 Ift122-003 115853530-115926690 protein_coding
  ENSMUST00000112923 Ift122-004 115853508-115926400 protein_coding
  ENSMUST00000112925 Ift122-001 115853470-115926699 protein_coding
  ENSMUST00000124283 Ift122-005 115899110-115926694 processed_transcript
  ENSMUST00000125889 Ift122-007 115853645-115875297 processed_transcript
  ENSMUST00000138113 Ift122-009 115885908-115887360 processed_transcript
  ENSMUST00000141305 Ift122-002 115853580-115926693 nonsense_mediated_decay
  ENSMUST00000146950 Ift122-011 115893976-115899619 processed_transcript
  ENSMUST00000149083 Ift122-008 115877267-115887355 processed_transcript
  ENSMUST00000152092 Ift122-010 115887140-115888832 processed_transcript
  ENSMUST00000155565 Ift122-006 115902627-115926695 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038234ENSMUST00000112923ENSMUST00000112925ENSMUST00000124283ENSMUST00000149083ENSMUST00000155565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038234 2.717±0.91 2.453±0.95 2.021±0.25 5.035±2.38 1.041±0.28 1.162±0.47 1.256±0.20 3.610±0.29 0.505±0.19 1.796±0.73 0.728±0.29 5.204±1.62 1.318±0.37 11.447±0.87
ENSMUST00000112923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.483±16.26
ENSMUST00000112925 3.848±2.97 1.691±0.33 3.622±0.08 6.907±1.36 1.448±0.53 1.015±0.30 0.734±0.00 5.236±1.72 0.533±0.25 2.833±0.66 0.636±0.15 6.095±1.98 1.590±0.49 24.262±3.18
ENSMUST00000124283 2.900±0.00 5.108±1.88 N/A 1.731±0.00 2.211±0.40 1.805±0.84 2.567±0.00 5.403±1.56 0.690±0.20 2.230±0.27 1.022±0.52 6.484±1.23 N/A 10.425±0.00
ENSMUST00000149083 N/A N/A N/A 10.121±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 58.645±0.00
ENSMUST00000155565 0.555±0.00 0.851±0.01 N/A 1.057±0.02 0.561±0.10 N/A 0.802±0.05 N/A 0.161±0.00 0.760±0.01 N/A 1.384±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030Y CIL_00030Y_0002 CGP 6:115840697-115926699
CIL_00030V CIL_00030V_0002 CGP 6:115853470-115938829

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0007227 IMP signal transduction downstream of smoothened
GO:0009953 IMP dorsal/ventral pattern formation
GO:0010172 IMP embryonic body morphogenesis
GO:0016020 IEA membrane
GO:0021914 IMP negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:0030991 ISS intraciliary transport particle A
GO:0032391 IDA photoreceptor connecting cilium
GO:0035050 IMP embryonic heart tube development
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0035720 IMP intraciliary anterograde transport
GO:0035721 IMP intraciliary retrograde transport
GO:0036064 IDA ciliary basal body
GO:0042733 IMP embryonic digit morphogenesis
GO:0045879 IMP negative regulation of smoothened signaling pathway
GO:0048593 IMP camera-type eye morphogenesis
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0060173 IMP limb development
GO:0060271 IMP cilium morphogenesis
GO:0060830 IGI ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 IGI smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0060971 IMP embryonic heart tube left/right pattern formation
GO:0061512 IEA protein localization to cilium
GO:0072372 IDA primary cilium
GO:0072594 IMP establishment of protein localization to organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000163913 IFT122 intraflagellar transport 122 protein_coding Homo_sapiens

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