C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 122
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038234 Ift122-003 ENSMUSG00000030323 10090 + 6:115853530-115926690 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038234
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038234 2.717±0.91 2.453±0.95 2.021±0.25 5.035±2.38 1.041±0.28 1.162±0.47 1.256±0.20 3.610±0.29 0.505±0.19 1.796±0.73 0.728±0.29 5.204±1.62 1.318±0.37 11.447±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030Y CIL_00030Y_0002 CGP 6:115840697-115926699
CIL_00030V CIL_00030V_0002 CGP 6:115853470-115938829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0007227 IMP signal transduction downstream of smoothened
GO:0009953 IMP dorsal/ventral pattern formation
GO:0010172 IMP embryonic body morphogenesis
GO:0016020 IEA membrane
GO:0021914 IMP negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:0030991 ISS intraciliary transport particle A
GO:0032391 IDA photoreceptor connecting cilium
GO:0035050 IMP embryonic heart tube development
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0035720 IMP intraciliary anterograde transport
GO:0035721 IMP intraciliary retrograde transport
GO:0036064 IDA ciliary basal body
GO:0042733 IMP embryonic digit morphogenesis
GO:0045879 IMP negative regulation of smoothened signaling pathway
GO:0048593 IMP camera-type eye morphogenesis
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0060173 IMP limb development
GO:0060271 IMP cilium morphogenesis
GO:0060830 IGI ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 IGI smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0060971 IMP embryonic heart tube left/right pattern formation
GO:0061512 IEA protein localization to cilium
GO:0072372 IDA primary cilium
GO:0072594 IMP establishment of protein localization to organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296266 IFT122-002 protein_coding Homo_sapiens 0 3448
ENST00000347300 IFT122-001 protein_coding Homo_sapiens 0 4224
ENST00000348417 IFT122-003 protein_coding Homo_sapiens 0 3448
ENST00000349441 IFT122-004 protein_coding Homo_sapiens 0 3751
ENST00000431818 IFT122-201 protein_coding Homo_sapiens 0 3542
ENST00000440957 IFT122-202 protein_coding Homo_sapiens 0 3919
ENST00000499853 RP11-529F4.1-001 unprocessed_pseudogene Homo_sapiens 0 195
ENST00000502304 IFT122-013 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000502456 IFT122-016 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000504021 IFT122-021 protein_coding Homo_sapiens 0 1903
ENST00000504653 IFT122-011 retained_intron Homo_sapiens 0 215
ENST00000506507 IFT122-007 retained_intron Homo_sapiens 0 3616
ENST00000507221 IFT122-028 protein_coding Homo_sapiens 0 501
ENST00000507564 IFT122-006 protein_coding Homo_sapiens 0 3842
ENST00000508654 IFT122-023 retained_intron Homo_sapiens 0 520
ENST00000508826 IFT122-014 protein_coding Homo_sapiens 0 254
ENST00000509195 IFT122-017 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000509522 IFT122-024 protein_coding Homo_sapiens 0 754
ENST00000509815 IFT122-010 processed_transcript Homo_sapiens 0 385
ENST00000510524 IFT122-012 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000511425 IFT122-009 retained_intron Homo_sapiens 0 1550
ENST00000511498 IFT122-019 protein_coding Homo_sapiens 0 551
ENST00000512157 IFT122-018 protein_coding Homo_sapiens 0 507
ENST00000512220 IFT122-005 nonsense_mediated_decay Homo_sapiens 0 3448
ENST00000512814 IFT122-027 retained_intron Homo_sapiens 0 660
ENST00000513190 IFT122-008 retained_intron Homo_sapiens 0 715
ENST00000513932 IFT122-025 processed_transcript Homo_sapiens 0 627
ENST00000514275 IFT122-015 protein_coding Homo_sapiens 0 219
ENST00000515783 IFT122-022 protein_coding Homo_sapiens 0 974

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