C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00030V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163913-ENSG00000163914 CGP 9606 3:129440036-129535169
GeneTranscriptPositionBiotype
ENSG00000129071 (MBD4)
methyl-CpG binding domain protein 4 		ENST00000249910 (MBD4-001) 129430950-129440009 protein_coding
ENST00000393278 (MBD4-201) 129430952-129440179 protein_coding
ENST00000429544 (MBD4-003) 129430944-129440029 protein_coding
ENST00000503197 (MBD4-002) 129431266-129440007 protein_coding
ENST00000505883 (MBD4-006) 129437047-129439937 processed_transcript
ENST00000507208 (MBD4-009) 129432176-129440035 protein_coding
ENST00000509587 (MBD4-004) 129433859-129439940 processed_transcript
ENST00000509828 (MBD4-005) 129431455-129439927 nonsense_mediated_decay
ENST00000511009 (MBD4-010) 129432533-129433553 retained_intron
ENST00000515266 (MBD4-007) 129432577-129434103 retained_intron
ENSG00000163914 (RHO)
rhodopsin 		ENST00000296271 (RHO-001) 129528640-129535169 protein_coding
CIL_00030V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030323-ENSMUSG00000030324 CGP 10090 6:115853470-115938829
GeneTranscriptPositionBiotype
ENSMUSG00000030323 (Ift122)
intraflagellar transport 122 		ENSMUST00000038234 (Ift122-003) 115853530-115926690 protein_coding
ENSMUST00000112923 (Ift122-004) 115853508-115926400 protein_coding
ENSMUST00000112925 (Ift122-001) 115853470-115926699 protein_coding
ENSMUST00000124283 (Ift122-005) 115899110-115926694 processed_transcript
ENSMUST00000125889 (Ift122-007) 115853645-115875297 processed_transcript
ENSMUST00000138113 (Ift122-009) 115885908-115887360 processed_transcript
ENSMUST00000141305 (Ift122-002) 115853580-115926693 nonsense_mediated_decay
ENSMUST00000146950 (Ift122-011) 115893976-115899619 processed_transcript
ENSMUST00000149083 (Ift122-008) 115877267-115887355 processed_transcript
ENSMUST00000152092 (Ift122-010) 115887140-115888832 processed_transcript
ENSMUST00000155565 (Ift122-006) 115902627-115926695 retained_intron
ENSMUSG00000030324 (Rho)
rhodopsin 		ENSMUST00000032471 (Rho-201) 115931927-115938829 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030V_0001ENSG00000129071ENST00000249910ENST00000393278ENST00000429544ENST00000503197ENST00000505883ENST00000507208ENST00000509587ENST00000509828ENST00000511009ENST00000515266ENSG00000163914ENST00000296271CIL_00030V_0002ENSMUSG00000030323ENSMUST00000038234ENSMUST00000112923ENSMUST00000112925ENSMUST00000124283ENSMUST00000125889ENSMUST00000138113ENSMUST00000141305ENSMUST00000146950ENSMUST00000149083ENSMUST00000152092ENSMUST00000155565ENSMUSG00000030324ENSMUST00000032471
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030V_0001ENSG00000129071ENST00000249910ENST00000429544ENST00000503197ENST00000507208ENST00000509828ENSG00000163914ENST00000296271CIL_00030V_0002ENSMUSG00000030323ENSMUST00000038234ENSMUST00000112923ENSMUST00000112925ENSMUST00000124283ENSMUST00000149083ENSMUST00000155565ENSMUSG00000030324ENSMUST00000032471
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129071 ENST00000249910 N/A N/A N/A N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000393278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429544 4.533±0.00 7.690±0.00 2.216±0.00 4.392±0.39 4.210±0.16 3.529±0.00 1.618±0.77 6.975±0.00 3.263±1.11 3.788±0.00 0.986±0.00 5.456±3.10 3.281±1.46 N/A
ENST00000503197 3.978±0.00 7.032±0.00 N/A 5.108±0.00 2.685±0.00 4.155±0.00 3.534±0.00 5.718±0.00 5.269±0.00 3.216±1.34 1.881±1.27 4.577±1.14 2.768±0.47 11.836±0.00
ENST00000505883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507208 N/A N/A N/A N/A 2.600±0.34 N/A N/A 4.056±1.65 N/A 3.124±0.00 1.262±0.00 3.488±2.01 2.882±0.00 N/A
ENST00000509587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.279±0.00 N/A N/A N/A
ENST00000511009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163914 ENST00000296271 N/A N/A N/A 0.209±0.01 0.103±0.00 N/A 0.088±0.00 N/A N/A N/A N/A 0.014±0.00 0.030±0.01 0.021±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030323 ENSMUST00000038234 2.717±0.91 2.453±0.95 2.021±0.25 5.035±2.38 1.041±0.28 1.162±0.47 1.256±0.20 3.610±0.29 0.505±0.19 1.796±0.73 0.728±0.29 5.204±1.62 1.318±0.37 11.447±0.87
ENSMUST00000112923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.483±16.26
ENSMUST00000112925 3.848±2.97 1.691±0.33 3.622±0.08 6.907±1.36 1.448±0.53 1.015±0.30 0.734±0.00 5.236±1.72 0.533±0.25 2.833±0.66 0.636±0.15 6.095±1.98 1.590±0.49 24.262±3.18
ENSMUST00000124283 2.900±0.00 5.108±1.88 N/A 1.731±0.00 2.211±0.40 1.805±0.84 2.567±0.00 5.403±1.56 0.690±0.20 2.230±0.27 1.022±0.52 6.484±1.23 N/A 10.425±0.00
ENSMUST00000125889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149083 N/A N/A N/A 10.121±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 58.645±0.00
ENSMUST00000152092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155565 0.555±0.00 0.851±0.01 N/A 1.057±0.02 0.561±0.10 N/A 0.802±0.05 N/A 0.161±0.00 0.760±0.01 N/A 1.384±0.00 N/A N/A
ENSMUSG00000030324 ENSMUST00000032471 0.167±0.14 0.427±0.08 0.041±0.00 0.207±0.10 0.145±0.05 0.053±0.02 0.085±0.06 0.132±0.07 0.017±0.01 0.212±0.07 0.050±0.02 0.551±0.26 0.120±0.05 0.702±0.31

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