C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 122
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163913 IFT122 9606 + 3:129440036-129520507 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296266 IFT122-002 129440139-129520345 protein_coding
  ENST00000347300 IFT122-001 129440125-129520351 protein_coding
  ENST00000348417 IFT122-003 129440254-129520339 protein_coding
  ENST00000349441 IFT122-004 129440244-129520351 protein_coding
  ENST00000431818 IFT122-201 129440036-129520507 protein_coding
  ENST00000440957 IFT122-202 129440036-129520507 protein_coding
  ENST00000448668 IFT122-030 129481530-129483892 retained_intron
  ENST00000502304 IFT122-013 129449871-129463626 nonsense_mediated_decay
  ENST00000502456 IFT122-016 129449871-129463622 nonsense_mediated_decay
  ENST00000504021 IFT122-021 129440237-129520355 protein_coding
  ENST00000504444 IFT122-026 129512381-129514820 retained_intron
  ENST00000504653 IFT122-011 129449871-129452210 retained_intron
  ENST00000506507 IFT122-007 129449870-129520355 retained_intron
  ENST00000507221 IFT122-028 129488191-129502764 protein_coding
  ENST00000507564 IFT122-006 129440212-129520265 protein_coding
  ENST00000508654 IFT122-023 129476139-129478073 retained_intron
  ENST00000508826 IFT122-014 129449871-129464693 protein_coding
  ENST00000509195 IFT122-017 129449871-129464694 nonsense_mediated_decay
  ENST00000509522 IFT122-024 129479890-129504421 protein_coding
  ENST00000509815 IFT122-010 129449871-129476508 processed_transcript
  ENST00000510524 IFT122-012 129449871-129461277 nonsense_mediated_decay
  ENST00000511425 IFT122-009 129487506-129520355 retained_intron
  ENST00000511498 IFT122-019 129461309-129476415 protein_coding
  ENST00000512157 IFT122-018 129449871-129476753 protein_coding
  ENST00000512220 IFT122-005 129440233-129520347 nonsense_mediated_decay
  ENST00000512814 IFT122-027 129481509-129495487 retained_intron
  ENST00000513190 IFT122-008 129512358-129520349 retained_intron
  ENST00000513891 IFT122-029 129481381-129483837 retained_intron
  ENST00000513932 IFT122-025 129495450-129504033 processed_transcript
  ENST00000514081 IFT122-020 129463121-129464690 retained_intron
  ENST00000514275 IFT122-015 129449871-129463626 protein_coding
  ENST00000515783 IFT122-022 129449871-129479917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347300ENST00000348417ENST00000349441ENST00000504021ENST00000506507
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347300 3.054±0.00 N/A 3.384±0.00 2.676±0.00 1.960±0.00 1.730±0.00 3.274±1.29 0.998±0.00 2.280±1.01 1.678±0.00 4.687±3.11 3.016±0.76 N/A
ENST00000348417 N/A 1.706±0.00 N/A N/A N/A N/A N/A 1.203±0.00 N/A N/A N/A N/A 52.195±20.32
ENST00000349441 4.196±0.00 N/A 4.857±0.00 N/A 3.070±0.00 N/A N/A N/A 3.678±0.00 N/A N/A 2.479±0.43 13.633±0.00
ENST00000504021 N/A N/A N/A N/A N/A 1.450±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000506507 N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A 3.232±0.43 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0001 CGP 3:129401321-129440179
CIL_00030Y CIL_00030Y_0001 CGP 3:129430944-129520507
CIL_00030V CIL_00030V_0001 CGP 3:129440036-129535169

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 ISS neural tube closure
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007227 IEA signal transduction downstream of smoothened
GO:0009953 IEA dorsal/ventral pattern formation
GO:0010172 ISS embryonic body morphogenesis
GO:0016020 IDA membrane
GO:0021914 IEA negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning
GO:0030991 IDA intraciliary transport particle A
GO:0032391 ISS photoreceptor connecting cilium
GO:0035050 ISS embryonic heart tube development
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0035720 IEA intraciliary anterograde transport
GO:0035721 ISS intraciliary retrograde transport
GO:0036064 IEA ciliary basal body
GO:0042733 IEA embryonic digit morphogenesis
GO:0045879 ISS negative regulation of smoothened signaling pathway
GO:0048593 ISS camera-type eye morphogenesis
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060173 ISS limb development
GO:0060271 ISS cilium morphogenesis
GO:0060830 IEA ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 IEA smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0060971 IEA embryonic heart tube left/right pattern formation
GO:0061512 IMP protein localization to cilium
GO:0072372 ISS primary cilium
GO:0072594 IEA establishment of protein localization to organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030323 Ift122 intraflagellar transport 122 protein_coding Mus_musculus

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