C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane channel-like gene family 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030650 Tmc5 10090 + 7:118597297-118675086 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057320 Tmc5-003 118633736-118675086 protein_coding
  ENSMUST00000098088 Tmc5-201 118597297-118675085 protein_coding
  ENSMUST00000121715 Tmc5-001 118597297-118675086 protein_coding
  ENSMUST00000121744 Tmc5-002 118600170-118675086 protein_coding
  ENSMUST00000155572 Tmc5-004 118622514-118623469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057320ENSMUST00000098088ENSMUST00000121715ENSMUST00000121744ENSMUST00000155572
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057320 0.116±0.00 0.055±0.03 N/A 0.037±0.01 0.277±0.00 5.558±2.37 0.091±0.00 0.131±0.04 0.135±0.15 0.693±0.15 0.026±0.01 1.156±0.04 0.916±0.00 32.764±12.95
ENSMUST00000098088 0.227±0.04 N/A N/A N/A 0.234±0.14 N/A 0.202±0.06 0.170±0.00 0.021±0.00 0.310±0.00 N/A 1.143±0.38 1.836±0.57 N/A
ENSMUST00000121715 0.128±0.03 N/A 0.018±0.00 0.088±0.06 0.255±0.01 N/A 0.198±0.00 0.091±0.00 0.019±0.01 N/A 0.052±0.01 0.919±0.44 1.539±0.31 N/A
ENSMUST00000121744 0.188±0.00 0.087±0.04 N/A 0.056±0.00 0.290±0.04 10.423±3.33 0.072±0.02 0.360±0.13 0.430±0.18 0.308±0.07 0.015±0.00 1.474±1.41 3.750±2.14 N/A
ENSMUST00000155572 0.413±0.00 0.298±0.00 0.280±0.02 1.380±1.42 0.732±0.00 N/A 0.187±0.00 N/A 0.205±0.13 N/A 0.323±0.19 3.996±1.35 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MY CIL_0006MY_0002 CGP 7:118597297-118705778

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006811 IEA ion transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013252 TMC5 transmembrane channel-like 5 protein_coding Danio_rerio
ENSG00000103534 TMC5 transmembrane channel-like 5 protein_coding Homo_sapiens

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