C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057320 Tmc5-003 ENSMUSG00000030650 10090 + 7:118633736-118675086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057320
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057320 0.116±0.00 0.055±0.03 0.037±0.01 0.277±0.00 5.558±2.37 0.091±0.00 0.131±0.04 0.135±0.15 0.693±0.15 0.026±0.01 1.156±0.04 0.916±0.00 32.764±12.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MY CIL_0006MY_0002 CGP 7:118597297-118705778

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006811 IEA ion transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219821 TMC5-002 protein_coding Homo_sapiens 0 2034
ENST00000381414 TMC5-001 protein_coding Homo_sapiens 0 1548
ENST00000396229 TMC5-201 protein_coding Homo_sapiens 0 1989
ENST00000541464 TMC5-007 protein_coding Homo_sapiens 0 1155
ENST00000542583 TMC5-006 protein_coding Homo_sapiens 0 1989
ENST00000561503 TMC5-004 protein_coding Homo_sapiens 0 1986
ENST00000564959 TMC5-005 protein_coding Homo_sapiens 0 1879
ENST00000567478 TMC5-008 retained_intron Homo_sapiens 0 1893
ENST00000572147 TMC5-011 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000574033 TMC5-012 nonsense_mediated_decay Homo_sapiens 0 446

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