C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane channel-like 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103534 TMC5 9606 + 16:19410496-19499113 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000219821 TMC5-002 19456450-19499113 protein_coding
  ENST00000381414 TMC5-001 19410723-19499113 protein_coding
  ENST00000396229 TMC5-201 19410735-19499113 protein_coding
  ENST00000541464 TMC5-007 19410539-19498140 protein_coding
  ENST00000542583 TMC5-006 19417696-19499113 protein_coding
  ENST00000561503 TMC5-004 19456484-19498218 protein_coding
  ENST00000563675 TMC5-009 19410496-19430640 processed_transcript
  ENST00000564959 TMC5-005 19456517-19498140 protein_coding
  ENST00000567478 TMC5-008 19456487-19492317 retained_intron
  ENST00000572147 TMC5-011 19474165-19481426 nonsense_mediated_decay
  ENST00000574033 TMC5-012 19486941-19498277 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000219821ENST00000396229ENST00000541464ENST00000542583ENST00000561503ENST00000564959ENST00000567478ENST00000574033
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000219821 0.036±0.00 0.035±0.00 N/A 0.400±0.00 N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A 0.651±0.00
ENST00000396229 N/A N/A 0.051±0.00 0.473±0.00 N/A 0.009±0.00 N/A N/A N/A N/A 2.021±0.00 1.145±0.90 N/A
ENST00000541464 N/A N/A N/A 0.881±0.00 3.423±0.00 0.029±0.00 0.304±0.00 0.073±0.00 4.290±2.35 N/A 3.336±2.47 0.897±0.02 0.829±0.00
ENST00000542583 N/A N/A N/A 0.638±0.00 N/A 0.008±0.00 N/A N/A 5.078±0.00 N/A 3.148±2.53 N/A N/A
ENST00000561503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.642±0.00 N/A 1.743±0.00
ENST00000564959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.231±0.00
ENST00000567478 N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.721±0.00
ENST00000574033 0.156±0.00 N/A N/A 2.872±0.00 0.305±0.00 N/A N/A 0.297±0.04 6.263±0.00 0.058±0.00 5.149±0.00 N/A 2.551±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MY CIL_0006MY_0001 CGP 16:19410496-19522145

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013252 TMC5 transmembrane channel-like 5 protein_coding Danio_rerio
ENSMUSG00000030650 Tmc5 transmembrane channel-like gene family 5 protein_coding Mus_musculus

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