C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC017158
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030780 BC017158 10090 - 7:128271379-128298170 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033044 BC017158-001 128271379-128298170 protein_coding
  ENSMUST00000124216 BC017158-007 128276301-128288705 retained_intron
  ENSMUST00000126263 BC017158-004 128272326-128298095 nonsense_mediated_decay
  ENSMUST00000137677 BC017158-006 128287965-128290615 protein_coding
  ENSMUST00000139452 BC017158-008 128275965-128297576 retained_intron
  ENSMUST00000147091 BC017158-005 128271379-128274848 retained_intron
  ENSMUST00000154003 BC017158-002 128272107-128298109 retained_intron
  ENSMUST00000155177 BC017158-003 128272107-128298108 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033044ENSMUST00000126263ENSMUST00000147091ENSMUST00000154003ENSMUST00000155177
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033044 17.068±4.25 15.610±5.82 9.588±0.26 6.072±0.16 11.268±4.26 21.451±2.51 2.737±0.88 52.238±0.00 9.573±2.24 14.657±2.28 0.707±0.22 18.766±8.43 6.249±2.12 3.357±0.15
ENSMUST00000126263 N/A N/A N/A 5.661±0.00 N/A N/A N/A N/A N/A N/A N/A 12.759±0.00 6.217±1.11 0.945±0.00
ENSMUST00000147091 N/A N/A 2.220±0.23 0.963±0.00 1.732±0.00 N/A N/A N/A 3.120±0.58 N/A 0.200±0.06 3.491±0.56 1.103±0.22 0.204±0.00
ENSMUST00000154003 5.749±3.15 N/A 1.886±0.25 1.099±0.01 2.154±1.01 5.118±0.43 0.652±0.16 N/A 3.134±1.29 4.102±0.31 0.226±0.00 4.794±1.89 1.454±0.48 0.910±0.12
ENSMUST00000155177 N/A N/A N/A 2.426±0.00 N/A N/A N/A N/A N/A N/A N/A 3.743±0.00 1.899±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000708 CIL_000708_0002 CGP 7:128246812-128272430
CIL_00035J CIL_00035J_0002 CGP 7:128265657-128298170

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059919 C3H16orf58 chromosome 16 open reading frame 58 protein_coding Danio_rerio
ENSG00000140688 C16orf58 chromosome 16 open reading frame 58 protein_coding Homo_sapiens

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