C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 16 open reading frame 58
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140688 C16orf58 9606 - 16:31489471-31509309 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327237 C16orf58-001 31489489-31508413 protein_coding
  ENST00000430477 C16orf58-201 31489498-31508379 protein_coding
  ENST00000541442 C16orf58-005 31493455-31508384 retained_intron
  ENST00000564807 C16orf58-007 31496879-31509309 protein_coding
  ENST00000565128 C16orf58-008 31493736-31508386 nonsense_mediated_decay
  ENST00000566148 C16orf58-010 31499242-31508154 retained_intron
  ENST00000567578 C16orf58-009 31493899-31508384 nonsense_mediated_decay
  ENST00000567673 C16orf58-011 31493197-31496952 retained_intron
  ENST00000567994 C16orf58-002 31490273-31508384 protein_coding
  ENST00000568491 C16orf58-006 31489494-31493738 retained_intron
  ENST00000570164 C16orf58-004 31489471-31508391 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327237ENST00000430477ENST00000567673ENST00000567994ENST00000568491ENST00000570164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327237 12.664±0.00 12.141±0.00 N/A 7.753±4.59 11.631±0.00 13.346±0.00 1.783±1.07 17.317±12.59 23.210±0.00 9.228±0.00 1.639±0.00 19.028±14.24 24.883±13.05 14.495±1.12
ENST00000430477 3.748±0.00 N/A N/A 3.243±0.86 3.475±1.09 2.572±0.26 1.686±0.00 N/A 0.829±0.00 3.423±1.99 N/A N/A N/A N/A
ENST00000567673 N/A N/A N/A N/A N/A N/A 1.193±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000567994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.154±0.00 15.669±0.00 17.234±0.00
ENST00000568491 2.519±0.00 10.043±0.00 4.478±0.00 3.560±1.74 2.426±1.06 0.988±0.00 1.136±0.00 8.056±0.00 N/A 2.399±0.00 0.813±0.00 11.244±4.81 N/A 6.998±1.70
ENST00000570164 N/A 4.244±0.00 N/A N/A N/A N/A N/A 8.520±0.00 8.199±0.00 3.954±0.00 N/A N/A N/A 7.682±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090H CIL_00090H_0001 VISTA 16:31421736-32023283
CIL_000708 CIL_000708_0001 CGP 16:31471585-31490860
CIL_00035J CIL_00035J_0001 CGP 16:31483002-31509309

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059919 C3H16orf58 chromosome 16 open reading frame 58 protein_coding Danio_rerio
ENSMUSG00000030780 BC017158 cDNA sequence BC017158 protein_coding Mus_musculus

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