C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LYR motif containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030922 Lyrm1 10090 + 7:119895861-119916756 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054440 Lyrm1-002 119895867-119916285 protein_coding
  ENSMUST00000106516 Lyrm1-003 119900108-119916756 protein_coding
  ENSMUST00000106517 Lyrm1-004 119896292-119916750 protein_coding
  ENSMUST00000106518 Lyrm1-001 119895861-119916754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054440ENSMUST00000106516ENSMUST00000106517ENSMUST00000106518
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054440 0.278±0.00 0.553±0.00 N/A 1.635±0.00 0.890±0.12 0.543±0.29 1.182±0.00 N/A 0.347±0.12 N/A 0.953±0.00 0.551±0.12 0.963±0.35 11.519±0.00
ENSMUST00000106516 0.775±0.45 N/A 0.436±0.00 0.496±0.08 N/A 0.476±0.00 0.384±0.07 0.869±0.24 0.325±0.19 0.604±0.09 0.880±0.20 0.097±0.00 0.423±0.08 N/A
ENSMUST00000106517 0.311±0.24 0.422±0.15 0.558±0.16 0.939±0.06 0.395±0.25 0.252±0.09 0.360±0.10 0.460±0.00 0.178±0.06 0.287±0.09 0.854±0.24 0.448±0.26 0.206±0.08 3.275±0.00
ENSMUST00000106518 0.801±0.32 0.507±0.21 2.696±0.55 2.281±0.30 1.183±0.69 0.569±0.32 1.617±0.25 1.807±0.79 0.789±0.20 0.545±0.41 3.136±0.76 1.066±0.69 1.870±0.95 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MY CIL_0003MY_0002 CGP 7:119794006-119896291
CIL_0003N9 CIL_0003N9_0002 CGP 7:119853163-119916756
CIL_0003N5 CIL_0003N5_0002 CGP 7:119895861-120095177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026281 lyrm1 LYR motif containing 1 protein_coding Danio_rerio
ENSG00000102897 LYRM1 LYR motif containing 1 protein_coding Homo_sapiens

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