C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003MY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000005189-ENSG00000188215 CGP 9606 16:20806429-20900384
GeneTranscriptPositionBiotype
ENSG00000005189 (AC004381.6)
Putative RNA exonuclease NEF-sp 		ENST00000261377 (AC004381.6-001) 20806499-20849668 protein_coding
ENST00000348433 (AC004381.6-003) 20806521-20849665 protein_coding
ENST00000561474 (AC004381.6-020) 20828524-20845076 protein_coding
ENST00000563045 (AC004381.6-018) 20825562-20827186 retained_intron
ENST00000563068 (AC004381.6-008) 20806708-20814992 protein_coding
ENST00000563617 (AC004381.6-013) 20807157-20825871 protein_coding
ENST00000564200 (AC004381.6-017) 20821037-20828535 processed_transcript
ENST00000564274 (AC004381.6-004) 20806698-20849480 protein_coding
ENST00000565340 (AC004381.6-011) 20806624-20832199 protein_coding
ENST00000566276 (AC004381.6-012) 20806552-20827186 protein_coding
ENST00000566518 (AC004381.6-015) 20806663-20828535 nonsense_mediated_decay
ENST00000566993 (AC004381.6-002) 20806496-20849639 nonsense_mediated_decay
ENST00000567297 (AC004381.6-016) 20806757-20825906 processed_transcript
ENST00000568046 (AC004381.6-007) 20806445-20814982 protein_coding
ENST00000568334 (AC004381.6-019) 20839853-20844662 retained_intron
ENST00000568476 (AC004381.6-014) 20806617-20825897 processed_transcript
ENST00000568501 (AC004381.6-009) 20806527-20821834 protein_coding
ENST00000568647 (AC004381.6-010) 20806657-20821771 protein_coding
ENST00000568894 (AC004381.6-006) 20806429-20821802 protein_coding
ENSG00000102897 (LYRM1)
LYR motif containing 1 		ENST00000219168 (LYRM1-201) 20900753-20925004 protein_coding
ENST00000396052 (LYRM1-001) 20901104-20925006 protein_coding
ENST00000412082 (LYRM1-002) 20900235-20925004 protein_coding
ENST00000439021 (LYRM1-202) 20900235-20925004 protein_coding
ENST00000562740 (LYRM1-005) 20900666-20924381 protein_coding
ENST00000564457 (LYRM1-007) 20899868-20900491 processed_transcript
ENST00000567165 (LYRM1-003) 20900411-20921463 nonsense_mediated_decay
ENST00000567954 (LYRM1-006) 20900799-20924116 protein_coding
ENST00000568663 (LYRM1-008) 20899902-20924263 protein_coding
ENST00000568820 (LYRM1-004) 20900491-20922007 nonsense_mediated_decay
ENST00000569023 (LYRM1-009) 20900450-20924116 protein_coding
ENSG00000188215 (DCUN1D3)
DCN1, defective in cullin neddylation 1, domain containing 3 		ENST00000324344 (DCUN1D3-001) 20854925-20900384 protein_coding
ENST00000563934 (DCUN1D3-002) 20858996-20868980 protein_coding
ENSG00000275908 (U4atac)
U4atac minor spliceosomal RNA 		ENST00000618345 (U4atac.1-201) 20823443-20823537 snRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003MY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030924-ENSMUSG00000048787 CGP 10090 7:119794006-119896291
GeneTranscriptPositionBiotype
ENSMUSG00000030922 (Lyrm1)
LYR motif containing 1 		ENSMUST00000054440 (Lyrm1-002) 119895867-119916285 protein_coding
ENSMUST00000106516 (Lyrm1-003) 119900108-119916756 protein_coding
ENSMUST00000106517 (Lyrm1-004) 119896292-119916750 protein_coding
ENSMUST00000106518 (Lyrm1-001) 119895861-119916754 protein_coding
ENSMUSG00000030924 (2610020H08Rik)
RIKEN cDNA 2610020H08 gene 		ENSMUST00000033218 (2610020H08Rik-001) 119794006-119848943 protein_coding
ENSMUST00000084644 (2610020H08Rik-201) 119794130-119848938 protein_coding
ENSMUST00000106520 (2610020H08Rik-004) 119794010-119848943 protein_coding
ENSMUST00000133758 (2610020H08Rik-002) 119794130-119848938 nonsense_mediated_decay
ENSMUST00000137015 (2610020H08Rik-003) 119794151-119820856 retained_intron
ENSMUST00000138689 (2610020H08Rik-007) 119834357-119844039 processed_transcript
ENSMUST00000149132 (2610020H08Rik-005) 119824100-119832780 processed_transcript
ENSMUST00000151248 (2610020H08Rik-008) 119844206-119845436 retained_intron
ENSMUST00000155938 (2610020H08Rik-006) 119825551-119828010 retained_intron
ENSMUSG00000030929 (Eri2)
exoribonuclease 2 		ENSMUST00000033224 (Eri2-002) 119783827-119793982 nonsense_mediated_decay
ENSMUST00000063902 (Eri2-004) 119771938-119793967 protein_coding
ENSMUST00000106523 (Eri2-005) 119768679-119793967 protein_coding
ENSMUST00000125595 (Eri2-003) 119782573-119793975 retained_intron
ENSMUST00000133926 (Eri2-006) 119786494-119787952 retained_intron
ENSMUST00000139192 (Eri2-007) 119783844-119793959 nonsense_mediated_decay
ENSMUST00000150844 (Eri2-001) 119784896-119794058 protein_coding
ENSMUSG00000048787 (Dcun1d3)
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) 		ENSMUST00000059851 (Dcun1d3-001) 119853163-119895745 protein_coding
ENSMUST00000098080 (Dcun1d3-003) 119855813-119895543 protein_coding
ENSMUST00000106519 (Dcun1d3-002) 119857325-119896291 protein_coding
ENSMUST00000137888 (Dcun1d3-005) 119859621-119861804 protein_coding
ENSMUST00000142120 (Dcun1d3-004) 119857993-119861832 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MY_0001ENSG00000005189ENST00000261377ENST00000348433ENST00000564274ENST00000566993ENSG00000102897ENST00000219168ENST00000412082ENST00000439021ENST00000567954ENSG00000188215ENST00000324344ENST00000563934ENSG00000275908ENST00000618345CIL_0003MY_0002ENSMUSG00000030922ENSMUST00000054440ENSMUST00000106516ENSMUST00000106517ENSMUST00000106518ENSMUSG00000030924ENSMUST00000033218ENSMUST00000084644ENSMUST00000106520ENSMUST00000137015ENSMUST00000138689ENSMUSG00000030929ENSMUST00000033224ENSMUST00000125595ENSMUST00000139192ENSMUST00000150844ENSMUSG00000048787ENSMUST00000059851ENSMUST00000098080ENSMUST00000106519ENSMUST00000137888ENSMUST00000142120
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005189 ENST00000261377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.882±0.00
ENST00000348433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.610±18.96
ENST00000561474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 71.247±0.00
ENST00000565340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 105.570±0.00
ENST00000567297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000102897 ENST00000219168 N/A N/A N/A 7.956±0.00 N/A N/A 2.885±0.00 N/A N/A N/A 2.586±0.00 N/A N/A N/A
ENST00000396052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412082 N/A N/A N/A 10.292±0.00 N/A N/A N/A N/A N/A N/A 4.404±0.00 11.510±0.00 17.495±0.00 N/A
ENST00000439021 10.855±0.00 13.465±0.00 N/A N/A 17.920±0.00 14.823±0.00 21.370±0.00 14.002±4.89 32.121±0.00 9.647±0.00 1.368±0.00 19.378±0.00 N/A N/A
ENST00000562740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567954 N/A N/A N/A 10.167±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188215 ENST00000324344 4.828±0.00 3.497±0.00 N/A 2.089±0.00 9.111±0.00 N/A 3.310±0.00 3.500±0.85 4.043±0.73 2.029±0.44 0.966±0.00 6.863±2.84 3.289±0.69 N/A
ENST00000563934 8.808±0.00 N/A N/A N/A 14.304±0.00 N/A N/A N/A 7.245±0.00 N/A 1.461±0.00 N/A N/A N/A
ENSG00000275908 ENST00000618345 N/A N/A N/A N/A N/A N/A N/A 0.742±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030922 ENSMUST00000054440 0.278±0.00 0.553±0.00 N/A 1.635±0.00 0.890±0.12 0.543±0.29 1.182±0.00 N/A 0.347±0.12 N/A 0.953±0.00 0.551±0.12 0.963±0.35 11.519±0.00
ENSMUST00000106516 0.775±0.45 N/A 0.436±0.00 0.496±0.08 N/A 0.476±0.00 0.384±0.07 0.869±0.24 0.325±0.19 0.604±0.09 0.880±0.20 0.097±0.00 0.423±0.08 N/A
ENSMUST00000106517 0.311±0.24 0.422±0.15 0.558±0.16 0.939±0.06 0.395±0.25 0.252±0.09 0.360±0.10 0.460±0.00 0.178±0.06 0.287±0.09 0.854±0.24 0.448±0.26 0.206±0.08 3.275±0.00
ENSMUST00000106518 0.801±0.32 0.507±0.21 2.696±0.55 2.281±0.30 1.183±0.69 0.569±0.32 1.617±0.25 1.807±0.79 0.789±0.20 0.545±0.41 3.136±0.76 1.066±0.69 1.870±0.95 N/A
ENSMUSG00000030924 ENSMUST00000033218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 1.543±0.00 6.839±0.00
ENSMUST00000084644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.17 N/A 5.645±0.00
ENSMUST00000106520 N/A N/A 1.763±0.00 N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 1.906±1.09 1.887±0.54 9.698±0.62
ENSMUST00000133758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.824±0.00 N/A N/A
ENSMUST00000138689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 470.162±0.00
ENSMUST00000149132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030929 ENSMUST00000033224 2.302±0.97 N/A 1.521±0.32 1.858±1.22 1.131±0.00 N/A 0.362±0.12 N/A 2.985±0.45 1.253±0.13 0.269±0.05 1.879±0.32 1.510±0.71 N/A
ENSMUST00000063902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125595 N/A 0.386±0.00 0.502±0.00 0.666±0.00 N/A N/A 0.100±0.00 N/A N/A N/A 0.070±0.00 0.582±0.29 N/A N/A
ENSMUST00000133926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139192 1.235±0.00 N/A 1.766±0.34 5.693±1.97 1.736±0.47 N/A 0.593±0.14 1.035±0.21 3.545±0.99 1.082±0.19 0.253±0.09 1.980±0.84 2.126±0.85 N/A
ENSMUST00000150844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 1.243±0.00 2.393±1.02 N/A
ENSMUSG00000048787 ENSMUST00000059851 2.513±0.18 1.380±0.21 2.916±0.08 3.458±2.40 2.305±0.29 0.848±0.29 0.813±0.35 1.943±0.28 0.798±0.30 2.743±0.47 1.419±0.24 1.880±0.93 0.993±0.36 3.724±1.52
ENSMUST00000098080 1.244±0.22 0.446±0.17 1.267±0.13 0.830±0.01 1.597±0.67 0.360±0.09 0.442±0.10 1.122±0.18 0.584±0.17 0.953±0.17 0.812±0.22 0.785±0.37 1.407±0.27 N/A
ENSMUST00000106519 N/A 0.646±0.11 N/A N/A 1.037±0.00 N/A N/A N/A N/A N/A N/A 1.542±0.00 1.430±0.20 20.240±14.04
ENSMUST00000137888 N/A 6.398±1.36 N/A N/A 5.006±0.00 5.225±1.79 N/A N/A 3.978±0.00 N/A N/A 9.896±2.73 N/A N/A
ENSMUST00000142120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.929±0.47 N/A N/A

Loading