C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 9030624J02 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030982 9030624J02Rik 10090 + 7:118740226-118842966 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033280 9030624J02Rik-004 118764124-118841487 protein_coding
  ENSMUST00000059390 9030624J02Rik-001 118740226-118842966 protein_coding
  ENSMUST00000106552 9030624J02Rik-007 118740747-118841479 protein_coding
  ENSMUST00000106553 9030624J02Rik-006 118740747-118841489 protein_coding
  ENSMUST00000129334 9030624J02Rik-005 118740732-118784055 processed_transcript
  ENSMUST00000131162 9030624J02Rik-011 118821623-118826428 retained_intron
  ENSMUST00000136623 9030624J02Rik-009 118748197-118766544 retained_intron
  ENSMUST00000146350 9030624J02Rik-008 118752663-118754219 retained_intron
  ENSMUST00000148586 9030624J02Rik-002 118740749-118747965 retained_intron
  ENSMUST00000149749 9030624J02Rik-010 118794577-118826204 protein_coding
  ENSMUST00000175730 9030624J02Rik-012 118806832-118813537 retained_intron
  ENSMUST00000175922 9030624J02Rik-003 118740747-118762146 protein_coding
  ENSMUST00000175952 9030624J02Rik-013 118824575-118841299 processed_transcript
  ENSMUST00000176197 9030624J02Rik-014 118804183-118833991 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033280ENSMUST00000106552ENSMUST00000106553ENSMUST00000175952
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033280 N/A N/A N/A N/A N/A N/A 6.446±0.35 N/A N/A N/A N/A 8.944±0.12 N/A
ENSMUST00000106552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.511±2.32 N/A
ENSMUST00000106553 17.884±1.08 12.508±0.74 21.228±0.24 12.266±1.32 8.706±1.69 6.793±0.75 12.290±2.74 7.967±2.88 17.277±1.02 4.863±0.51 16.289±4.45 19.505±1.95 8.761±0.22
ENSMUST00000175952 N/A N/A 95.195±0.00 N/A N/A N/A N/A N/A N/A N/A 76.883±0.00 90.298±21.91 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MW CIL_0006MW_0002 CGP 7:118712552-118842966
CIL_00054B CIL_00054B_0002 CGP 7:118740226-118856254

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020041 C12H16orf62 chromosome 16 open reading frame 62 protein_coding Danio_rerio
ENSG00000103544 C16orf62 chromosome 16 open reading frame 62 protein_coding Homo_sapiens

Loading