C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AF4/FMR2 family, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031189 Aff2 10090 + X:69360294-69868037 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033532 Aff2-001 69360294-69868037 protein_coding
  ENSMUST00000139977 Aff2-004 69360505-69544623 processed_transcript
  ENSMUST00000143097 Aff2-002 69360700-69785176 processed_transcript
  ENSMUST00000151662 Aff2-003 69856695-69866777 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033532ENSMUST00000139977ENSMUST00000143097ENSMUST00000151662
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033532 0.307±0.25 0.427±0.07 3.238±0.80 0.195±0.08 0.112±0.03 0.277±0.24 0.042±0.02 0.033±0.03 0.574±0.27 0.022±0.02 6.076±2.79 0.758±0.00 0.209±0.14
ENSMUST00000139977 N/A 0.708±0.18 N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A
ENSMUST00000143097 N/A N/A N/A N/A N/A N/A 0.038±0.02 0.042±0.00 N/A N/A N/A N/A 0.075±0.00
ENSMUST00000151662 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PX CIL_0007PX_0002 VISTA X:69323406-69924546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002151 IDA G-quadruplex RNA binding
GO:0006397 IEA mRNA processing
GO:0007611 IMP learning or memory
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043484 IDA regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052242 aff2 AF4/FMR2 family, member 2 protein_coding Danio_rerio
ENSG00000155966 AFF2 AF4/FMR2 family, member 2 protein_coding Homo_sapiens

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