C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033532 Aff2-001 ENSMUSG00000031189 10090 + X:69360294-69868037 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033532
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033532 0.307±0.25 0.427±0.07 3.238±0.80 0.195±0.08 0.112±0.03 0.277±0.24 0.042±0.02 0.033±0.03 0.574±0.27 0.022±0.02 6.076±2.79 0.758±0.00 0.209±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PX CIL_0007PX_0002 VISTA X:69323406-69924546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002151 IDA G-quadruplex RNA binding
GO:0006397 IEA mRNA processing
GO:0007611 IMP learning or memory
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043484 IDA regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286437 AFF2-201 protein_coding Homo_sapiens 0 3295
ENST00000342251 AFF2-003 protein_coding Homo_sapiens 0 4674
ENST00000370457 AFF2-202 protein_coding Homo_sapiens 0 4909
ENST00000370458 AFF2-002 protein_coding Homo_sapiens 0 1633
ENST00000370460 AFF2-001 protein_coding Homo_sapiens 0 3214

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