C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AF4/FMR2 family, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155966 AFF2 9606 + X:148500619-149000663 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286437 AFF2-201 148719091-149000663 protein_coding
  ENST00000342251 AFF2-003 148500708-148994424 protein_coding
  ENST00000370457 AFF2-202 148500619-149000663 protein_coding
  ENST00000370458 AFF2-002 148501009-148904377 protein_coding
  ENST00000370460 AFF2-001 148500619-149000663 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286437ENST00000342251ENST00000370457ENST00000370458
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286437 N/A 0.037±0.00 N/A 0.346±0.00 0.176±0.00 0.024±0.00 0.011±0.00 N/A 0.009±0.00 0.100±0.00 N/A 0.174±0.21 1.022±0.19 0.677±0.24
ENST00000342251 0.109±0.00 0.019±0.00 0.094±0.00 0.793±0.32 0.198±0.11 0.116±0.00 0.029±0.00 0.213±0.00 N/A 0.612±0.07 0.086±0.00 0.196±0.17 1.453±0.41 0.748±0.26
ENST00000370457 N/A 0.012±0.00 N/A 0.488±0.07 N/A 0.008±0.00 N/A 0.048±0.00 0.124±0.00 0.621±0.00 N/A N/A 0.570±0.00 0.200±0.00
ENST00000370458 N/A N/A N/A 3.126±0.00 N/A 0.415±0.00 0.074±0.00 0.026±0.00 0.641±0.00 1.787±0.00 N/A 1.265±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PX CIL_0007PX_0001 VISTA X:148447492-149048635
CIL_0000PK CIL_0000PK_0002 CGP X:148500619-149521096

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002151 ISS G-quadruplex RNA binding
GO:0006397 IEA mRNA processing
GO:0007420 TAS brain development
GO:0007611 IEA learning or memory
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043484 IMP regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052242 aff2 AF4/FMR2 family, member 2 protein_coding Danio_rerio
ENSMUSG00000031189 Aff2 AF4/FMR2 family, member 2 protein_coding Mus_musculus

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