C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ephrin B1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031217 Efnb1 10090 + X:99136130-99148991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052839 Efnb1-001 99136130-99148991 protein_coding
  ENSMUST00000151750 Efnb1-002 99138131-99147230 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052839ENSMUST00000151750
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052839 14.863±0.93 14.964±3.16 10.840±0.89 15.689±10.74 8.242±3.45 31.919±5.69 5.113±0.07 10.373±1.57 3.428±0.41 48.486±14.20 2.242±0.43 26.245±8.42 25.820±12.06 3.269±1.31
ENSMUST00000151750 N/A N/A N/A 7.142±0.00 3.353±0.00 N/A N/A N/A N/A N/A N/A 29.025±25.36 77.181±31.04 6.340±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U1 CIL_0001U1_0002 CGP X:99003248-99148991
CIL_0001TA CIL_0001TA_0002 CGP X:99136130-99471273

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IBA plasma membrane
GO:0007411 IMP axon guidance
GO:0009880 IMP embryonic pattern specification
GO:0016021 IEA integral component of membrane
GO:0042102 IDA positive regulation of T cell proliferation
GO:0045121 IDA membrane raft
GO:0046875 IPI ephrin receptor binding
GO:0048013 IBA ephrin receptor signaling pathway
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007723 efnb1 ephrin B1 protein_coding Danio_rerio
ENSG00000090776 EFNB1 ephrin-B1 protein_coding Homo_sapiens

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