C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ephrin B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052839 Efnb1-001 ENSMUSG00000031217 10090 + X:99136130-99148991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052839
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052839 14.863±0.93 14.964±3.16 10.840±0.89 15.689±10.74 8.242±3.45 31.919±5.69 5.113±0.07 10.373±1.57 3.428±0.41 48.486±14.20 2.242±0.43 26.245±8.42 25.820±12.06 3.269±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U1 CIL_0001U1_0002 CGP X:99003248-99148991
CIL_0001TA CIL_0001TA_0002 CGP X:99136130-99471273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IBA plasma membrane
GO:0007411 IMP axon guidance
GO:0009880 IMP embryonic pattern specification
GO:0016021 IEA integral component of membrane
GO:0042102 IDA positive regulation of T cell proliferation
GO:0045121 IDA membrane raft
GO:0046875 IPI ephrin receptor binding
GO:0048013 IBA ephrin receptor signaling pathway
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000204961 EFNB1-001 protein_coding Homo_sapiens 0 2942

Loading