C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064780 Gabre-001 ENSMUSG00000031340 10090 - X:72255999-72274803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064780
Transcript ID Adipose Adrenal Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064780 0.131±0.05 0.326±0.06 0.242±0.11 0.580±0.00 0.214±0.20 0.024±0.01 0.450±0.02 0.125±0.06 0.631±0.21 0.359±0.10 0.091±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000118 CIL_000118_0002 CGP X:72222017-72274803

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 ISS GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005887 ISS integral component of plasma membrane
GO:0006821 ISS chloride transport
GO:0007214 ISS gamma-aminobutyric acid signaling pathway
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370328 GABRE-001 protein_coding Homo_sapiens 0 966
ENST00000441219 GABRE-005 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000465405 GABRE-006 retained_intron Homo_sapiens 3e-32 143
ENST00000474932 GABRE-009 retained_intron Homo_sapiens 0 405
ENST00000476016 GABRE-013 retained_intron Homo_sapiens 5.60519e-45 185
ENST00000528117 TMEM9B-003 protein_coding Homo_sapiens 0.000001 58

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