C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plexin B3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031385 Plxnb3 10090 + X:73757090-73772514 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002079 Plxnb3-006 73757099-73772514 protein_coding
  ENSMUST00000146812 Plxnb3-002 73757090-73772514 retained_intron
  ENSMUST00000147127 Plxnb3-003 73757090-73772514 retained_intron
  ENSMUST00000149478 Plxnb3-001 73757090-73772514 retained_intron
  ENSMUST00000155096 Plxnb3-004 73765531-73769664 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002079ENSMUST00000146812ENSMUST00000147127ENSMUST00000149478ENSMUST00000155096
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002079 0.156±0.00 0.348±0.14 0.231±0.03 0.286±0.21 0.235±0.10 0.137±0.06 0.263±0.02 0.050±0.03 0.023±0.01 N/A 0.070±0.02 N/A 0.043±0.00 0.007±0.00
ENSMUST00000146812 N/A 0.178±0.00 0.099±0.01 1.460±0.00 0.073±0.03 N/A N/A 0.051±0.00 0.033±0.01 N/A 0.089±0.01 0.121±0.04 0.017±0.01 0.028±0.00
ENSMUST00000147127 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 0.124±0.00 0.093±0.03 N/A 0.031±0.00
ENSMUST00000149478 N/A N/A N/A N/A N/A 0.134±0.04 0.213±0.00 N/A 0.026±0.00 0.084±0.00 0.078±0.03 0.213±0.02 N/A 0.002±0.00
ENSMUST00000155096 0.105±0.00 0.252±0.03 N/A 1.545±0.00 0.262±0.02 0.262±0.00 0.483±0.12 0.179±0.10 0.040±0.02 0.251±0.00 N/A 0.634±0.52 0.027±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GI CIL_0007GI_0003 CGP X:73716597-73772514
CIL_0007GB CIL_0007GB_0003 CGP X:73757090-73778925

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001938 IEA positive regulation of endothelial cell proliferation
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0007162 ISS negative regulation of cell adhesion
GO:0007399 IEA nervous system development
GO:0010593 ISS negative regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0017154 ISS semaphorin receptor activity
GO:0019904 ISS protein domain specific binding
GO:0030336 ISS negative regulation of cell migration
GO:0034260 ISS negative regulation of GTPase activity
GO:0050918 ISS positive chemotaxis
GO:0051022 IPI Rho GDP-dissociation inhibitor binding
GO:0060326 ISS cell chemotaxis
GO:0071526 ISS semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032990 plxnb3 plexin B3 protein_coding Danio_rerio
ENSDARG00000077486 plxna1 plexin A1 protein_coding Danio_rerio
ENSG00000198753 PLXNB3 plexin B3 protein_coding Homo_sapiens

Loading