C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin B3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002079 Plxnb3-006 ENSMUSG00000031385 10090 + X:73757099-73772514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMusclePlacentaTestisENSMUST00000002079
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Placenta Testis
ENSMUST00000002079 0.156±0.00 0.348±0.14 0.231±0.03 0.286±0.21 0.235±0.10 0.137±0.06 0.263±0.02 0.050±0.03 0.023±0.01 0.070±0.02 0.043±0.00 0.007±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GI CIL_0007GI_0003 CGP X:73716597-73772514
CIL_0007GB CIL_0007GB_0003 CGP X:73757090-73778925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001938 IEA positive regulation of endothelial cell proliferation
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0007162 ISS negative regulation of cell adhesion
GO:0007399 IEA nervous system development
GO:0010593 ISS negative regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0017154 ISS semaphorin receptor activity
GO:0019904 ISS protein domain specific binding
GO:0030336 ISS negative regulation of cell migration
GO:0034260 ISS negative regulation of GTPase activity
GO:0050918 ISS positive chemotaxis
GO:0051022 IPI Rho GDP-dissociation inhibitor binding
GO:0060326 ISS cell chemotaxis
GO:0071526 ISS semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361971 PLXNB3-001 protein_coding Homo_sapiens 0 5046
ENST00000448847 PLXNB3-002 protein_coding Homo_sapiens 0 316
ENST00000469190 PLXNB3-006 processed_transcript Homo_sapiens 0 285
ENST00000472415 PLXNB3-007 processed_transcript Homo_sapiens 0 244
ENST00000485980 PLXNB3-004 processed_transcript Homo_sapiens 0 259
ENST00000489426 SRPK3-007 protein_coding Homo_sapiens 0 553
ENST00000538966 PLXNB3-201 protein_coding Homo_sapiens 0 5048

Loading