C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: L1 cell adhesion molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031391 L1cam 10090 - X:73853778-73896105 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066576 L1cam-010 73854672-73869804 protein_coding
  ENSMUST00000102871 L1cam-001 73853955-73880834 protein_coding
  ENSMUST00000114430 L1cam-008 73853778-73869905 protein_coding
  ENSMUST00000124560 L1cam-011 73855005-73856762 protein_coding
  ENSMUST00000129612 L1cam-002 73863713-73880795 retained_intron
  ENSMUST00000130110 L1cam-004 73857482-73858633 retained_intron
  ENSMUST00000135104 L1cam-005 73856679-73857414 retained_intron
  ENSMUST00000141221 L1cam-013 73865686-73896105 processed_transcript
  ENSMUST00000144478 L1cam-007 73854899-73856394 retained_intron
  ENSMUST00000145805 L1cam-006 73856425-73857664 retained_intron
  ENSMUST00000146790 L1cam-014 73865763-73870279 protein_coding
  ENSMUST00000148250 L1cam-009 73859426-73861123 protein_coding
  ENSMUST00000155246 L1cam-003 73859073-73860155 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLungMuscleTestisENSMUST00000066576ENSMUST00000102871ENSMUST00000114430
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Lung Muscle Testis
ENSMUST00000066576 N/A N/A 7.483±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000102871 1.963±0.13 N/A 27.774±17.11 8.553±2.69 N/A 4.895±1.09 5.071±0.00 N/A N/A
ENSMUST00000114430 N/A 6.250±0.00 5.758±0.00 5.657±1.10 1.132±0.28 9.499±3.04 3.075±0.51 0.802±0.00 0.136±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001US CIL_0001US_0002 CGP X:73793359-73896105

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005178 IDA integrin binding
GO:0005515 IPI protein binding
GO:0005925 IEA focal adhesion
GO:0007156 IMP homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IMP heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0007166 IDA cell surface receptor signaling pathway
GO:0007411 IMP axon guidance
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016020 IDA membrane
GO:0022409 IMP positive regulation of cell-cell adhesion
GO:0031175 IDA neuron projection development
GO:0033631 IMP cell-cell adhesion mediated by integrin
GO:0033691 IDA sialic acid binding
GO:0034109 IMP homotypic cell-cell adhesion
GO:0042734 IDA presynaptic membrane
GO:0042802 IDA identical protein binding
GO:0043195 IDA terminal bouton
GO:0043621 IPI protein self-association
GO:0050850 IDA positive regulation of calcium-mediated signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007149 nadl1.2 neural adhesion molecule L1.2 protein_coding Danio_rerio
ENSDARG00000015025 nadl1.1 neural adhesion molecule L1.1 protein_coding Danio_rerio
ENSG00000198910 L1CAM L1 cell adhesion molecule protein_coding Homo_sapiens

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