C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031715 Smarca5 10090 - 8:80698507-80739497 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043359 Smarca5-001 80698507-80739497 protein_coding
  ENSMUST00000122807 Smarca5-002 80705485-80739425 processed_transcript
  ENSMUST00000140110 Smarca5-004 80715959-80717579 retained_intron
  ENSMUST00000142470 Smarca5-005 80709426-80711698 retained_intron
  ENSMUST00000148455 Smarca5-003 80725582-80726392 retained_intron
  ENSMUST00000150277 Smarca5-006 80709738-80710861 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043359ENSMUST00000122807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043359 1.123±0.32 N/A 4.368±0.25 8.488±0.38 0.746±0.18 1.832±0.71 1.096±0.10 1.152±0.40 4.970±5.17 2.129±0.51 1.891±0.88 11.938±5.75 11.235±7.61 5.372±7.36
ENSMUST00000122807 0.996±0.37 13.101±2.76 N/A 3.660±0.13 3.851±3.86 7.115±2.69 1.089±0.44 1.288±0.75 2.427±1.74 3.549±0.83 N/A 9.823±7.51 5.509±2.20 4.905±4.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KM CIL_0008KM_0002 VISTA 8:80201065-80801915

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000183 IDA chromatin silencing at rDNA
GO:0000793 IEA condensed chromosome
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005677 IDA chromatin silencing complex
GO:0006200 IEA ATP catabolic process
GO:0006302 IMP double-strand break repair
GO:0006333 IDA chromatin assembly or disassembly
GO:0006334 IEA nucleosome assembly
GO:0006338 IGI chromatin remodeling
GO:0006352 IEA DNA-templated transcription, initiation
GO:0016584 IEA nucleosome positioning
GO:0016589 IEA NURF complex
GO:0016887 IEA ATPase activity
GO:0031010 IPI ISWI-type complex
GO:0031213 IEA RSF complex
GO:0031491 IEA nucleosome binding
GO:0042393 IEA histone binding
GO:0043596 IEA nuclear replication fork
GO:0045893 TAS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052348 smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein_coding Danio_rerio
ENSG00000153147 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein_coding Homo_sapiens

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