C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043359 Smarca5-001 ENSMUSG00000031715 10090 - 8:80698507-80739497 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043359
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043359 1.123±0.32 4.368±0.25 8.488±0.38 0.746±0.18 1.832±0.71 1.096±0.10 1.152±0.40 4.970±5.17 2.129±0.51 1.891±0.88 11.938±5.75 11.235±7.61 5.372±7.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KM CIL_0008KM_0002 VISTA 8:80201065-80801915

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000183 IDA chromatin silencing at rDNA
GO:0000793 IEA condensed chromosome
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005677 IDA chromatin silencing complex
GO:0006200 IEA ATP catabolic process
GO:0006302 IMP double-strand break repair
GO:0006333 IDA chromatin assembly or disassembly
GO:0006334 IEA nucleosome assembly
GO:0006338 IGI chromatin remodeling
GO:0006352 IEA DNA-templated transcription, initiation
GO:0016584 IEA nucleosome positioning
GO:0016589 IEA NURF complex
GO:0016887 IEA ATPase activity
GO:0031010 IPI ISWI-type complex
GO:0031213 IEA RSF complex
GO:0031491 IEA nucleosome binding
GO:0042393 IEA histone binding
GO:0043596 IEA nuclear replication fork
GO:0045893 TAS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283131 SMARCA5-001 protein_coding Homo_sapiens 0 5155
ENST00000508573 SMARCA5-006 retained_intron Homo_sapiens 0 396
ENST00000515531 SMARCA5-004 retained_intron Homo_sapiens 0 224

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