C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122807 Smarca5-002 ENSMUSG00000031715 10090 - 8:80705485-80739425 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000122807
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000122807 0.996±0.37 13.101±2.76 3.660±0.13 3.851±3.86 7.115±2.69 1.089±0.44 1.288±0.75 2.427±1.74 3.549±0.83 9.823±7.51 5.509±2.20 4.905±4.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KM CIL_0008KM_0002 VISTA 8:80201065-80801915

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283131 SMARCA5-001 protein_coding Homo_sapiens 0 2591
ENST00000515531 SMARCA5-004 retained_intron Homo_sapiens 0 224

Loading