C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tropomyosin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031799 Tpm4 10090 + 8:72134975-72153142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003575 Tpm4-001 72135259-72153142 protein_coding
  ENSMUST00000123177 Tpm4-002 72134975-72144709 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003575ENSMUST00000123177
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003575 79.271±8.80 49.330±6.23 67.054±14.77 31.789±21.19 60.926±16.24 51.932±12.63 24.398±2.97 34.822±1.71 27.218±19.51 137.346±7.61 10.375±0.70 108.838±43.76 271.111±86.01 6.081±5.02
ENSMUST00000123177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 106.601±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IM CIL_0000IM_0002 CGP 8:72134975-72183904

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0001725 ISO stress fiber
GO:0002102 IDA podosome
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IDA cytoplasm
GO:0005925 IEA focal adhesion
GO:0016020 IEA membrane
GO:0030863 IDA cortical cytoskeleton
GO:0031941 IDA filamentous actin
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023963 tpm4a tropomyosin 4a protein_coding Danio_rerio
ENSG00000167460 TPM4 tropomyosin 4 protein_coding Homo_sapiens

Loading