C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003575 Tpm4-001 ENSMUSG00000031799 10090 + 8:72135259-72153142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003575 79.271±8.80 49.330±6.23 67.054±14.77 31.789±21.19 60.926±16.24 51.932±12.63 24.398±2.97 34.822±1.71 27.218±19.51 137.346±7.61 10.375±0.70 108.838±43.76 271.111±86.01 6.081±5.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IM CIL_0000IM_0002 CGP 8:72134975-72183904

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0001725 ISO stress fiber
GO:0002102 IDA podosome
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IDA cytoplasm
GO:0005925 IEA focal adhesion
GO:0016020 IEA membrane
GO:0030863 IDA cortical cytoskeleton
GO:0031941 IDA filamentous actin
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054763 tpma-202 protein_coding Danio_rerio 0 331
ENSDART00000039657 tpma-201 protein_coding Danio_rerio 0 331
ENST00000300933 TPM4-002 protein_coding Homo_sapiens 0 1122
ENST00000344824 TPM4-001 protein_coding Homo_sapiens 0 944
ENST00000520239 GS1-44D20.1-001 processed_pseudogene Homo_sapiens 0 791
ENST00000587201 TPM4-011 retained_intron Homo_sapiens 0 525
ENST00000588032 TPM4-016 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000591226 TPM4-006 retained_intron Homo_sapiens 0 320
ENST00000591645 TPM4-018 processed_transcript Homo_sapiens 0 488

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