C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tropomyosin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167460 TPM4 9606 + 19:16067021-16103005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300933 TPM4-002 16076306-16103005 protein_coding
  ENST00000344824 TPM4-001 16067507-16101790 protein_coding
  ENST00000586193 TPM4-017 16088639-16093598 retained_intron
  ENST00000586499 TPM4-008 16067700-16088093 protein_coding
  ENST00000586833 TPM4-009 16075686-16093544 protein_coding
  ENST00000587201 TPM4-011 16076499-16088452 retained_intron
  ENST00000588032 TPM4-016 16088059-16102377 nonsense_mediated_decay
  ENST00000588410 TPM4-012 16077021-16088066 protein_coding
  ENST00000588483 TPM4-014 16080826-16086476 protein_coding
  ENST00000588507 TPM4-010 16076100-16093564 protein_coding
  ENST00000589897 TPM4-007 16067021-16076141 protein_coding
  ENST00000590180 TPM4-013 16080056-16082046 processed_transcript
  ENST00000591226 TPM4-006 16099667-16102338 retained_intron
  ENST00000591645 TPM4-018 16093107-16101757 processed_transcript
  ENST00000592138 TPM4-015 16081723-16093581 protein_coding
  ENST00000592822 TPM4-019 16093572-16095428 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300933ENST00000344824ENST00000588032ENST00000591645
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300933 155.520±0.00 112.862±0.00 N/A 27.187±22.73 42.647±29.67 63.474±55.92 14.084±9.92 78.845±0.00 22.777±13.28 188.523±181.28 11.062±0.00 152.437±93.80 209.359±31.71 78.968±17.72
ENST00000344824 N/A N/A 7.098±0.00 N/A 19.451±0.00 7.483±0.00 N/A 2.795±0.00 52.252±0.00 N/A N/A 42.362±9.70 N/A N/A
ENST00000588032 N/A N/A 5.686±0.00 7.564±0.00 55.318±0.00 13.969±0.00 N/A N/A N/A 33.817±0.00 2.307±0.00 112.740±66.32 160.216±0.00 N/A
ENST00000591645 N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.696±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IM CIL_0000IM_0001 CGP 19:16067021-16134234

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0001725 IDA stress fiber
GO:0002102 IEA podosome
GO:0003779 IEA actin binding
GO:0005509 NAS calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005862 TAS muscle thin filament tropomyosin
GO:0005925 IDA focal adhesion
GO:0006928 TAS cellular component movement
GO:0006936 TAS muscle contraction
GO:0008307 TAS structural constituent of muscle
GO:0016020 IDA membrane
GO:0030049 TAS muscle filament sliding
GO:0030863 IEA cortical cytoskeleton
GO:0031941 IEA filamentous actin
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023963 tpm4a tropomyosin 4a protein_coding Danio_rerio
ENSMUSG00000031799 Tpm4 tropomyosin 4 protein_coding Mus_musculus

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