C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sphingomyelin phosphodiesterase 3, neutral
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031906 Smpd3 10090 - 8:106252548-106337988 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067512 Smpd3-201 106252548-106337988 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLungOvaryPlacentaTestisENSMUST00000067512
Transcript ID Adipose Adrenal Brain Breast Heart Lung Ovary Placenta Testis
ENSMUST00000067512 2.889±0.76 3.074±0.31 10.661±0.55 6.459±1.54 1.262±0.11 2.848±0.94 2.315±0.11 1.894±0.00 1.590±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CE CIL_0000CE_0002 CGP 8:106200438-106252794
CIL_0000C5 CIL_0000C5_0002 CGP 8:106210936-106337988
CIL_0005WZ CIL_0005WZ_0002 CGP 8:106252548-106425889

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000137 IDA Golgi cis cisterna
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0004767 IDA sphingomyelin phosphodiesterase activity
GO:0005794 IDA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006684 IDA sphingomyelin metabolic process
GO:0007049 IEA cell cycle
GO:0007165 TAS signal transduction
GO:0030072 IMP peptide hormone secretion
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070608 smpd3 sphingomyelin phosphodiesterase 3, neutral protein_coding Danio_rerio
ENSG00000103056 SMPD3 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) protein_coding Homo_sapiens

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