C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingomyelin phosphodiesterase 3, neutral
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067512 Smpd3-201 ENSMUSG00000031906 10090 - 8:106252548-106337988 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLungOvaryPlacentaTestisENSMUST00000067512
Transcript ID Adipose Adrenal Brain Breast Heart Lung Ovary Placenta Testis
ENSMUST00000067512 2.889±0.76 3.074±0.31 10.661±0.55 6.459±1.54 1.262±0.11 2.848±0.94 2.315±0.11 1.894±0.00 1.590±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CE CIL_0000CE_0002 CGP 8:106200438-106252794
CIL_0000C5 CIL_0000C5_0002 CGP 8:106210936-106337988
CIL_0005WZ CIL_0005WZ_0002 CGP 8:106252548-106425889

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000137 IDA Golgi cis cisterna
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0004767 IDA sphingomyelin phosphodiesterase activity
GO:0005794 IDA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006684 IDA sphingomyelin metabolic process
GO:0007049 IEA cell cycle
GO:0007165 TAS signal transduction
GO:0030072 IMP peptide hormone secretion
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219334 SMPD3-001 protein_coding Homo_sapiens 0 2850
ENST00000561749 SMPD3-012 protein_coding Homo_sapiens 0 466
ENST00000563226 SMPD3-002 protein_coding Homo_sapiens 0 2170
ENST00000563455 SMPD3-008 processed_transcript Homo_sapiens 6.99949e-42 174
ENST00000566009 SMPD3-010 processed_transcript Homo_sapiens 0 551
ENST00000566466 SMPD3-007 processed_transcript Homo_sapiens 0 250
ENST00000567223 SMPD3-013 retained_intron Homo_sapiens 0 634
ENST00000567811 SMPD3-009 retained_intron Homo_sapiens 0 551
ENST00000568373 SMPD3-003 protein_coding Homo_sapiens 0 1971
ENST00000574662 SMPD3-014 protein_coding Homo_sapiens 0 841

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