C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily C, member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031997 Trpc6 10090 + 9:8544196-8680565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050433 Trpc6-201 8544196-8680565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050433
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050433 0.290±0.08 0.534±0.17 0.283±0.00 1.005±1.28 3.060±0.77 0.297±0.11 0.062±0.04 0.111±0.06 0.631±0.39 5.653±0.55 0.036±0.01 1.968±0.66 0.299±0.32 0.034±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003T4 CIL_0003T4_0002 CGP 9:8544196-8968611

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IDA ion channel activity
GO:0005261 IEA cation channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 ISO plasma membrane
GO:0005887 ISA integral component of plasma membrane
GO:0007204 IDA positive regulation of cytosolic calcium ion concentration
GO:0007568 IEA aging
GO:0015279 IDA store-operated calcium channel activity
GO:0032414 ISO positive regulation of ion transmembrane transporter activity
GO:0036057 IDA slit diaphragm
GO:0051928 ISO positive regulation of calcium ion transport
GO:0070301 IEA cellular response to hydrogen peroxide
GO:0070588 IEA calcium ion transmembrane transport
GO:0070679 IEA inositol 1,4,5 trisphosphate binding
GO:0071456 IEA cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056625 trpc6a transient receptor potential cation channel, subfamily C, member 6a protein_coding Danio_rerio
ENSDARG00000067730 trpc6b transient receptor potential cation channel, subfamily C, member 6b protein_coding Danio_rerio
ENSG00000137672 TRPC6 transient receptor potential cation channel, subfamily C, member 6 protein_coding Homo_sapiens

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