C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor interactor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117083 Trip4-002 ENSMUSG00000032386 10090 - 9:65833156-65885056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117083
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117083 3.265±0.73 2.309±0.40 2.961±0.00 5.316±2.94 2.123±0.51 2.172±0.42 1.284±0.19 1.641±0.36 2.323±0.69 1.819±0.29 1.717±0.37 4.483±3.00 6.639±3.84 9.034±3.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110
CIL_0003WZ CIL_0003WZ_0002 CGP 9:65692391-65908794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261884 TRIP4-001 protein_coding Homo_sapiens 0 2377
ENST00000381279 RP11-15H7.2-001 processed_pseudogene Homo_sapiens 0 1068
ENST00000557834 TRIP4-009 processed_transcript Homo_sapiens 0 457
ENST00000558162 TRIP4-004 protein_coding Homo_sapiens 0 361
ENST00000558820 TRIP4-007 nonsense_mediated_decay Homo_sapiens 0 902
ENST00000559565 TRIP4-008 processed_transcript Homo_sapiens 0 643
ENST00000559777 TRIP4-003 processed_transcript Homo_sapiens 0 455
ENST00000559833 TRIP4-005 processed_transcript Homo_sapiens 0 564
ENST00000560475 TRIP4-012 protein_coding Homo_sapiens 0 473
ENST00000560567 TRIP4-002 nonsense_mediated_decay Homo_sapiens 0 1254
ENST00000560920 TRIP4-010 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000561265 TRIP4-011 retained_intron Homo_sapiens 0 712

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