C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: debranching enzyme homolog 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066650 Dbr1-001 ENSMUSG00000032469 10090 + 9:99575799-99584501 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066650
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066650 2.109±0.49 3.379±0.73 5.745±0.61 6.447±1.09 2.700±1.03 3.176±1.00 1.222±0.20 2.770±1.38 5.523±2.96 2.002±0.73 1.543±0.26 4.642±2.21 6.386±2.16 0.990±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0002 VISTA 9:99473254-100074438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 ISS RNA splicing, via transesterification reactions
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0005634 ISS nucleus
GO:0008419 ISS RNA lariat debranching enzyme activity
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260803 DBR1-001 protein_coding Homo_sapiens 0 1515
ENST00000460271 DBR1-003 retained_intron Homo_sapiens 0 220
ENST00000463982 DBR1-002 processed_transcript Homo_sapiens 0 523
ENST00000477557 DBR1-004 nonsense_mediated_decay Homo_sapiens 0 436

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