C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: debranching enzyme homolog 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148987 Dbr1-002 ENSMUSG00000032469 10090 + 9:99575828-99582441 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverOvaryENSMUST00000148987
Transcript ID Adrenal Colon Liver Ovary
ENSMUST00000148987 13.483±6.50 2.645±0.00 2.125±0.16 6.812±2.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0002 VISTA 9:99473254-100074438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0008419 IDA RNA lariat debranching enzyme activity
GO:0090502 IDA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260803 DBR1-001 protein_coding Homo_sapiens 0 654
ENST00000460271 DBR1-003 retained_intron Homo_sapiens 0 215
ENST00000463982 DBR1-002 processed_transcript Homo_sapiens 0 523
ENST00000477557 DBR1-004 nonsense_mediated_decay Homo_sapiens 0 429

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