C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032473 Cldn18 10090 - 9:99689461-99717267 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035048 Cldn18-001 99689461-99710063 protein_coding
  ENSMUST00000112882 Cldn18-003 99691820-99717267 protein_coding
  ENSMUST00000131922 Cldn18-004 99692722-99717267 protein_coding
  ENSMUST00000136429 Cldn18-002 99692182-99710009 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035048ENSMUST00000112882ENSMUST00000131922ENSMUST00000136429
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035048 0.009±0.00 N/A 0.005±0.00 0.037±0.02 N/A 0.091±0.02 0.023±0.01 0.005±0.00 104.474±16.96 0.016±0.00 0.371±0.12 0.018±0.01 0.008±0.00
ENSMUST00000112882 N/A N/A N/A 0.040±0.02 N/A 0.145±0.03 0.035±0.00 0.004±0.00 N/A 0.034±0.00 0.764±0.00 N/A 0.043±0.00
ENSMUST00000131922 0.071±0.00 0.171±0.11 N/A 0.073±0.03 0.144±0.08 0.280±0.05 0.093±0.00 0.028±0.00 N/A N/A 0.702±0.21 0.084±0.08 0.039±0.00
ENSMUST00000136429 0.022±0.00 N/A N/A N/A N/A N/A 0.036±0.03 0.023±0.02 244.357±19.30 0.062±0.04 1.246±0.56 N/A 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0002 VISTA 9:99473254-100074438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079368 CLDN18 claudin 18 protein_coding Danio_rerio
ENSG00000066405 CLDN18 claudin 18 protein_coding Homo_sapiens

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