C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112882 Cldn18-003 ENSMUSG00000032473 10090 - 9:99691820-99717267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverMuscleOvaryTestisENSMUST00000112882
Transcript ID Breast Heart Kidney Liver Muscle Ovary Testis
ENSMUST00000112882 0.040±0.02 0.145±0.03 0.035±0.00 0.004±0.00 0.034±0.00 0.764±0.00 0.043±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0002 VISTA 9:99473254-100074438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000183605 CLDN18-002 protein_coding Homo_sapiens 0 747
ENST00000343735 CLDN18-001 protein_coding Homo_sapiens 0 974
ENST00000479660 CLDN18-003 nonsense_mediated_decay Homo_sapiens 0 422

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