C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035048 Cldn18-001 ENSMUSG00000032473 10090 - 9:99689461-99710063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035048
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035048 0.009±0.00 0.005±0.00 0.037±0.02 0.091±0.02 0.023±0.01 0.005±0.00 104.474±16.96 0.016±0.00 0.371±0.12 0.018±0.01 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0002 VISTA 9:99473254-100074438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000183605 CLDN18-002 protein_coding Homo_sapiens 0 935
ENST00000343735 CLDN18-001 protein_coding Homo_sapiens 0 763
ENST00000479660 CLDN18-003 nonsense_mediated_decay Homo_sapiens 0 422

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