C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032481 Smarcc1 10090 + 9:110132037-110240178 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035057 Smarcc1-003 110132037-110240178 protein_coding
  ENSMUST00000088716 Smarcc1-001 110132037-110240178 protein_coding
  ENSMUST00000111966 Smarcc1-004 110132037-110184303 protein_coding
  ENSMUST00000111968 Smarcc1-005 110132037-110213863 protein_coding
  ENSMUST00000111969 Smarcc1-002 110132037-110235291 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035057ENSMUST00000088716ENSMUST00000111968ENSMUST00000111969
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035057 N/A N/A N/A N/A 0.692±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000088716 9.109±4.66 16.537±0.93 6.893±0.76 13.952±7.32 9.622±4.13 8.169±2.01 2.860±0.44 5.367±0.59 5.546±3.30 6.781±0.64 1.653±0.10 19.531±5.62 10.057±4.05 4.234±1.64
ENSMUST00000111968 N/A N/A N/A 4.011±0.00 N/A N/A N/A N/A N/A N/A N/A 20.305±0.00 14.235±8.79 7.806±0.00
ENSMUST00000111969 0.977±0.00 7.070±2.37 N/A 7.810±3.79 3.382±1.33 4.548±1.73 1.034±0.29 1.284±0.29 1.860±0.55 1.887±0.62 2.481±0.43 13.959±12.71 17.551±23.44 4.889±4.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0002 VISTA 9:109592964-110196468

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001741 IDA XY body
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0006323 TAS DNA packaging
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008286 IDA insulin receptor signaling pathway
GO:0009887 IMP organ morphogenesis
GO:0016514 TAS SWI/SNF complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0047485 IEA protein N-terminus binding
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017397 smarcc1a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a protein_coding Danio_rerio
ENSDARG00000036251 smarcc1b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b protein_coding Danio_rerio
ENSG00000173473 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 protein_coding Homo_sapiens

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