C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173473 SMARCC1 9606 - 3:47585272-47782106 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254480 SMARCC1-001 47585272-47781917 protein_coding
  ENST00000425518 SMARCC1-002 47587590-47782106 processed_transcript
  ENST00000454240 SMARCC1-004 47729037-47781881 nonsense_mediated_decay
  ENST00000462198 SMARCC1-006 47678196-47701654 processed_transcript
  ENST00000483847 SMARCC1-008 47670350-47678365 retained_intron
  ENST00000485737 SMARCC1-007 47680223-47701402 retained_intron
  ENST00000485833 SMARCC1-005 47729025-47746405 processed_transcript
  ENST00000492896 SMARCC1-009 47590806-47610798 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254480ENST00000425518
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254480 1.429±0.00 1.816±0.00 1.864±0.00 5.930±0.00 2.779±0.00 0.557±0.00 0.944±0.14 1.579±0.41 1.383±0.00 2.007±0.00 1.869±0.99 1.255±0.00 4.993±2.91
ENST00000425518 N/A 2.728±0.00 1.845±0.43 2.858±0.00 N/A N/A N/A 3.826±0.00 2.912±0.00 1.046±0.00 17.267±0.00 20.481±0.00 16.648±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000350 CIL_000350_0003 CGP 3:47562239-47782106

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001741 IEA XY body
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008286 IEA insulin receptor signaling pathway
GO:0009887 IEA organ morphogenesis
GO:0016514 IDA SWI/SNF complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0047485 IPI protein N-terminus binding
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017397 smarcc1a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a protein_coding Danio_rerio
ENSDARG00000036251 smarcc1b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b protein_coding Danio_rerio
ENSMUSG00000032481 Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 protein_coding Mus_musculus

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