C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein phosphatase 1, regulatory (inhibitor) subunit 9A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032827 Ppp1r9a 10090 + 6:4902917-5165661 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035813 Ppp1r9a-001 4903320-5165661 protein_coding
  ENSMUST00000065842 Ppp1r9a-012 5113459-5116508 retained_intron
  ENSMUST00000164110 Ppp1r9a-007 4903432-5164516 retained_intron
  ENSMUST00000168998 Ppp1r9a-003 4902974-5078491 protein_coding
  ENSMUST00000175889 Ppp1r9a-002 4902917-5159590 protein_coding
  ENSMUST00000175962 Ppp1r9a-004 4903373-5009767 protein_coding
  ENSMUST00000176136 Ppp1r9a-011 5110659-5113787 processed_transcript
  ENSMUST00000176263 Ppp1r9a-006 4903018-5160221 nonsense_mediated_decay
  ENSMUST00000176729 Ppp1r9a-008 4906407-5154249 nonsense_mediated_decay
  ENSMUST00000177153 Ppp1r9a-009 4905416-5159809 nonsense_mediated_decay
  ENSMUST00000177338 Ppp1r9a-005 4903788-4906787 protein_coding
  ENSMUST00000177456 Ppp1r9a-010 4905416-5159817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035813ENSMUST00000164110ENSMUST00000177456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035813 N/A N/A 4.550±0.00 17.134±15.75 N/A N/A N/A 1.195±0.92 N/A 0.185±0.00 6.248±0.00 0.936±0.00 N/A
ENSMUST00000164110 N/A N/A 0.692±0.00 N/A N/A 0.732±0.26 N/A 0.389±0.33 N/A N/A 2.335±0.49 0.828±0.11 N/A
ENSMUST00000177456 0.891±0.00 2.694±0.00 N/A N/A 0.711±0.05 N/A 0.982±0.00 N/A 3.828±0.00 N/A 4.780±2.33 2.220±0.35 3.627±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053J CIL_00053J_0002 CGP 6:4747306-5165661
CIL_00053I CIL_00053I_0002 CGP 6:4902917-5193946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005856 ISO cytoskeleton
GO:0007015 IPI actin filament organization
GO:0019722 IMP calcium-mediated signaling
GO:0030175 IDA filopodium
GO:0030426 ISO growth cone
GO:0030864 IDA cortical actin cytoskeleton
GO:0031175 ISO neuron projection development
GO:0043197 IDA dendritic spine
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061304 ppp1r9a protein phosphatase 1, regulatory (inhibitor) subunit 9A protein_coding Danio_rerio
ENSG00000158528 PPP1R9A protein phosphatase 1, regulatory subunit 9A protein_coding Homo_sapiens

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