C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00053J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000242265-ENSG00000158528 CGP 9606 7:94656325-95296415
GeneTranscriptPositionBiotype
ENSG00000158528 (PPP1R9A)
protein phosphatase 1, regulatory subunit 9A 		ENST00000289495 (PPP1R9A-201) 94909898-95296415 protein_coding
ENST00000340694 (PPP1R9A-202) 94907637-95296413 protein_coding
ENST00000413325 (PPP1R9A-005) 94907202-94910332 protein_coding
ENST00000422324 (PPP1R9A-004) 94907968-94910237 protein_coding
ENST00000424654 (PPP1R9A-002) 94907675-95290355 protein_coding
ENST00000433360 (PPP1R9A-003) 94907637-95291265 protein_coding
ENST00000433881 (PPP1R9A-001) 94908279-95296402 protein_coding
ENST00000456331 (PPP1R9A-203) 94909898-95296415 protein_coding
ENSG00000214342 (ATP5F1P2)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 2 		ENST00000398143 (ATP5F1P2-001) 94738652-94739411 processed_pseudogene
ENSG00000219807 (ARF1P1)
ADP-ribosylation factor 1 pseudogene 1 		ENST00000406466 (ARF1P1-001) 94833904-94834447 processed_pseudogene
ENSG00000231153 (AC002429.4)
 ENST00000437672 (AC002429.4-001) 95018407-95018554 processed_pseudogene
ENSG00000232385 (RPS3AP25)
ribosomal protein S3a pseudogene 25 		ENST00000411660 (RPS3AP25-001) 94695027-94695819 processed_pseudogene
ENSG00000236197 (AC002429.5)
 ENST00000417881 (AC002429.5-001) 95154713-95214332 antisense
ENSG00000239030 (RNU6-956P)
RNA, U6 small nuclear 956, pseudogene 		ENST00000458868 (RNU6-956P-201) 94712409-94712511 snRNA
ENSG00000242265 (PEG10)
paternally expressed 10 		ENST00000465184 (PEG10-004) 94664735-94669180 processed_transcript
ENST00000482108 (PEG10-001) 94656325-94669695 protein_coding
ENST00000488574 (PEG10-002) 94656370-94665698 protein_coding
ENST00000493935 (PEG10-003) 94656370-94669637 processed_transcript
ENST00000612748 (PEG10-006) 94656370-94665698 protein_coding
ENST00000612941 (PEG10-008) 94656546-94669692 protein_coding
ENST00000613043 (PEG10-009) 94656384-94663650 protein_coding
ENST00000615790 (PEG10-007) 94656546-94669692 protein_coding
ENST00000617526 (PEG10-005) 94656546-94669692 protein_coding
ENSG00000271159 (GS1-200K5.1)
 ENST00000604731 (GS1-200K5.1-001) 95018163-95018397 processed_pseudogene
CIL_00053J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000092035-ENSMUSG00000032827 CGP 10090 6:4747306-5165661
GeneTranscriptPositionBiotype
ENSMUSG00000032827 (Ppp1r9a)
protein phosphatase 1, regulatory (inhibitor) subunit 9A 		ENSMUST00000035813 (Ppp1r9a-001) 4903320-5165661 protein_coding
ENSMUST00000065842 (Ppp1r9a-012) 5113459-5116508 retained_intron
ENSMUST00000164110 (Ppp1r9a-007) 4903432-5164516 retained_intron
ENSMUST00000168998 (Ppp1r9a-003) 4902974-5078491 protein_coding
ENSMUST00000175889 (Ppp1r9a-002) 4902917-5159590 protein_coding
ENSMUST00000175962 (Ppp1r9a-004) 4903373-5009767 protein_coding
ENSMUST00000176136 (Ppp1r9a-011) 5110659-5113787 processed_transcript
ENSMUST00000176263 (Ppp1r9a-006) 4903018-5160221 nonsense_mediated_decay
ENSMUST00000176729 (Ppp1r9a-008) 4906407-5154249 nonsense_mediated_decay
ENSMUST00000177153 (Ppp1r9a-009) 4905416-5159809 nonsense_mediated_decay
ENSMUST00000177338 (Ppp1r9a-005) 4903788-4906787 protein_coding
ENSMUST00000177456 (Ppp1r9a-010) 4905416-5159817 protein_coding
ENSMUSG00000083041 (Gm9835)
predicted pseudogene 9835 		ENSMUST00000121071 (Gm9835-001) 4893352-4893777 processed_pseudogene
ENSMUSG00000092035 (Peg10)
paternally expressed 10 		ENSMUST00000166678 (Peg10-201) 4747306-4760514 protein_coding
ENSMUST00000175823 (Peg10-002) 4747306-4755327 protein_coding
ENSMUST00000176204 (Peg10-001) 4747306-4760517 protein_coding
ENSMUST00000176551 (Peg10-003) 4755327-4760517 protein_coding
ENSMUSG00000096970 (2210017G18Rik)
RIKEN cDNA 2210017G18 gene 		ENSMUST00000181830 (2210017G18Rik-001) 4919626-4920828 lincRNA
ENSMUSG00000097385 (Gm26814)
predicted gene, 26814 		ENSMUST00000181178 (Gm26814-001) 4942147-4946295 lincRNA
ENSMUSG00000097396 (Gm26556)
predicted gene, 26556 		ENSMUST00000180645 (Gm26556-001) 4958983-4959302 lincRNA
ENSMUSG00000097464 (Gm26736)
predicted gene, 26736 		ENSMUST00000180425 (Gm26736-001) 4946568-4947803 lincRNA
ENSMUSG00000097630 (Gm26828)
predicted gene, 26828 		ENSMUST00000180640 (Gm26828-001) 4832196-4832404 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00053J_0001ENSG00000158528ENST00000289495ENST00000340694ENST00000413325ENST00000422324ENST00000424654ENST00000433360ENST00000433881ENST00000456331ENSG00000214342ENST00000398143ENSG00000219807ENST00000406466ENSG00000231153ENST00000437672ENSG00000232385ENST00000411660ENSG00000236197ENST00000417881ENSG00000239030ENST00000458868ENSG00000242265ENST00000465184ENST00000482108ENST00000488574ENST00000493935ENST00000612748ENST00000612941ENST00000613043ENST00000615790ENST00000617526ENSG00000271159ENST00000604731CIL_00053J_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00053J_0001ENSG00000158528ENST00000289495ENST00000340694ENST00000424654ENST00000433360ENST00000433881ENST00000456331ENSG00000214342ENST00000398143ENSG00000219807ENST00000406466ENSG00000231153ENST00000437672ENSG00000232385ENST00000411660ENSG00000236197ENST00000417881ENSG00000239030ENST00000458868ENSG00000242265ENST00000465184ENST00000482108ENST00000488574ENST00000493935ENST00000612941ENSG00000271159ENST00000604731CIL_00053J_0002ENSMUSG00000032827ENSMUST00000035813ENSMUST00000164110ENSMUST00000177456ENSMUSG00000083041ENSMUST00000121071ENSMUSG00000092035ENSMUST00000166678ENSMUST00000175823ENSMUST00000176204ENSMUST00000176551ENSMUSG00000096970ENSMUST00000181830ENSMUSG00000097385ENSMUST00000181178ENSMUSG00000097396ENSMUST00000180645ENSMUSG00000097464ENSMUST00000180425ENSMUSG00000097630ENSMUST00000180640
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000158528 ENST00000289495 N/A 0.073±0.00 N/A N/A 1.148±0.00 1.093±0.00 0.397±0.00 N/A 0.094±0.00 0.367±0.00 0.125±0.03 0.780±0.17 0.378±0.06 1.044±0.00
ENST00000340694 0.185±0.00 N/A N/A 5.661±0.63 N/A 0.437±0.00 N/A N/A N/A N/A N/A 0.779±0.00 N/A 0.492±0.00
ENST00000413325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424654 N/A 0.127±0.00 N/A N/A N/A 1.368±0.00 0.950±0.00 0.191±0.00 1.578±0.00 1.367±0.00 0.612±0.00 0.720±0.00 0.168±0.00 2.915±0.00
ENST00000433360 N/A N/A 0.335±0.00 N/A 0.465±0.00 0.597±0.00 0.946±0.36 0.123±0.00 N/A N/A N/A N/A 0.188±0.00 N/A
ENST00000433881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.556±0.09
ENST00000456331 0.212±0.00 N/A N/A 1.418±0.00 N/A 1.129±0.00 N/A 0.766±0.70 N/A N/A N/A 0.262±0.00 0.298±0.00 N/A
ENSG00000214342 ENST00000398143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 0.037±0.00 N/A
ENSG00000219807 ENST00000406466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.121±0.00
ENSG00000231153 ENST00000437672 N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000232385 ENST00000411660 0.140±0.00 0.265±0.00 N/A 0.042±0.00 0.113±0.00 0.198±0.00 0.063±0.00 0.114±0.00 0.038±0.00 0.134±0.00 0.126±0.00 0.238±0.00 0.122±0.06 0.116±0.00
ENSG00000236197 ENST00000417881 0.027±0.00 0.086±0.00 N/A 0.167±0.02 0.040±0.00 0.029±0.00 0.020±0.00 0.025±0.00 0.119±0.11 0.055±0.01 0.011±0.00 0.007±0.00 N/A 0.024±0.01
ENSG00000239030 ENST00000458868 N/A N/A N/A N/A N/A N/A N/A 1.159±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000242265 ENST00000465184 N/A 1.703±0.00 N/A 31.246±0.00 8.425±0.00 7.917±0.00 N/A 3.741±0.00 0.323±0.00 N/A N/A 55.130±29.19 1133.820±0.00 61.095±34.67
ENST00000482108 N/A N/A N/A 8.533±4.78 1.369±0.00 0.374±0.00 N/A N/A 2.780±0.00 0.855±0.27 0.614±0.00 8.042±0.55 125.028±0.00 8.685±0.00
ENST00000488574 N/A N/A 0.604±0.00 N/A N/A 0.310±0.00 0.086±0.00 N/A 1.251±0.00 N/A 0.277±0.00 N/A N/A N/A
ENST00000493935 N/A N/A N/A N/A N/A N/A N/A N/A 0.378±0.00 5.888±0.00 N/A 41.128±14.63 N/A 59.512±0.00
ENST00000612748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612941 0.783±0.00 1.049±0.00 1.061±0.00 8.824±1.31 4.068±0.48 3.207±2.94 0.240±0.09 1.535±0.55 0.758±0.51 2.906±0.25 0.145±0.00 15.129±5.15 159.702±39.31 13.998±6.66
ENST00000613043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271159 ENST00000604731 N/A N/A N/A 1.126±0.00 1.095±0.00 0.055±0.00 N/A N/A N/A N/A 0.052±0.00 N/A N/A 0.055±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032827 ENSMUST00000035813 N/A N/A 4.550±0.00 17.134±15.75 N/A N/A N/A N/A 1.195±0.92 N/A 0.185±0.00 6.248±0.00 0.936±0.00 N/A
ENSMUST00000065842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164110 N/A N/A 0.692±0.00 N/A N/A 0.732±0.26 N/A N/A 0.389±0.33 N/A N/A 2.335±0.49 0.828±0.11 N/A
ENSMUST00000168998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177456 0.891±0.00 2.694±0.00 N/A N/A 0.711±0.05 N/A N/A 0.982±0.00 N/A 3.828±0.00 N/A 4.780±2.33 2.220±0.35 3.627±1.86
ENSMUSG00000083041 ENSMUST00000121071 0.388±0.26 0.387±0.17 0.102±0.07 0.030±0.00 0.933±0.40 1.166±0.29 0.301±0.06 0.427±0.21 0.635±0.37 1.206±0.53 N/A 1.108±0.39 0.089±0.05 0.331±0.13
ENSMUSG00000092035 ENSMUST00000166678 1.019±0.08 44.424±8.55 0.944±0.08 16.730±7.10 0.405±0.03 0.146±0.07 0.084±0.00 0.077±0.07 3.308±2.22 0.456±0.09 0.052±0.03 N/A 278.619±206.86 N/A
ENSMUST00000175823 N/A N/A N/A N/A N/A 0.183±0.00 N/A 0.160±0.00 0.053±0.02 N/A 0.177±0.06 40.710±0.00 1872.315±653.84 6.022±0.00
ENSMUST00000176204 N/A N/A 0.572±0.29 5.420±0.00 N/A 0.127±0.05 0.031±0.00 0.046±0.02 1.431±0.81 N/A 0.050±0.03 N/A 90.099±29.60 N/A
ENSMUST00000176551 1.703±0.93 39.504±13.25 1.711±0.25 11.106±6.68 1.557±0.65 0.313±0.13 0.280±0.07 0.135±0.07 4.202±4.58 0.445±0.23 0.171±0.11 13.162±5.27 624.471±440.13 5.705±2.67
ENSMUSG00000096970 ENSMUST00000181830 0.072±0.02 N/A 0.091±0.01 0.297±0.27 0.131±0.07 0.291±0.04 0.057±0.00 0.052±0.03 0.082±0.02 0.153±0.06 N/A 0.160±0.16 0.115±0.09 0.066±0.03
ENSMUSG00000097385 ENSMUST00000181178 0.062±0.02 0.113±0.03 0.210±0.11 0.225±0.07 0.035±0.03 0.117±0.07 0.020±0.01 0.063±0.01 0.050±0.02 0.051±0.02 0.011±0.00 0.111±0.06 0.192±0.11 0.061±0.03
ENSMUSG00000097396 ENSMUST00000180645 N/A N/A 0.049±0.00 0.294±0.19 N/A N/A N/A N/A 0.041±0.00 N/A N/A 0.237±0.05 0.096±0.07 0.468±0.00
ENSMUSG00000097464 ENSMUST00000180425 0.057±0.03 0.059±0.00 0.385±0.16 0.213±0.09 0.091±0.01 N/A 0.028±0.00 0.125±0.00 0.058±0.02 0.112±0.00 0.036±0.00 0.167±0.11 0.181±0.17 0.048±0.02
ENSMUSG00000097630 ENSMUST00000180640 N/A N/A N/A N/A N/A N/A N/A N/A 0.334±0.00 N/A N/A N/A 0.205±0.00 N/A

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